Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 192 7e-44 seq1 107 2e-18 >seq3 Length=3828249 Score = 192 bits (212), Expect = 7e-44 Identities = 630/972 (65%), Gaps = 8/972 (1%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| || ||||| || || || || ||||||| || | | || | || ||||| Sbjct 3341804 GCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCG 3341863 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| || || | ||| ||||| | || | || || ||||| ||| || Sbjct 3341864 GTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 3341923 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 |||||||| || || ||||| || | || || || |||| | || | || || | | Sbjct 3341924 GCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTAC 3341983 Query 63072 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTA--TAGTGTA 63128 || | | || ||||||| || | | | | |||||| ||||| | ||| Sbjct 3341984 CACA-GCTTCTGAGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTA 3342042 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACA 63187 | | | ||||||||||| || | |||| ||| || || || || | || || Sbjct 3342043 CAGAGCC--TCGAACTCGTCACCGTAG-CATTCAGCAAGGCCGGGGCACTCGTTGGGGCA 3342099 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||| | | ||| || |||| | || || || ||||| ||||| ||||||||||| || Sbjct 3342100 CATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAG 3342159 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || | || || || | || | ||||| || || |||||| | |||||| Sbjct 3342160 GGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAG 3342219 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 |||| | | | ||||| ||||| || |||| ||| || || | | | ||||| || || Sbjct 3342220 GAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTT 3342279 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 ||| || ||||| || | ||| | || ||||| || | || | | ||| ||||| || Sbjct 3342280 GTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAT 3342339 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 ||| ||||| | || |||||||||| ||||| ||| |||| || ||| | | Sbjct 3342340 ACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAGTGGCGCGGATACGATGGAC 3342399 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 ||||| || || || ||||| || ||||| | |||||| || | || || || Sbjct 3342400 GTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTA 3342459 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 ||||||||| ||||| ||||| |||||| | || || || |||| || | | Sbjct 3342460 GATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTG 3342519 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 || || || || || | ||||| || ||||| || || |||| | || | || Sbjct 3342520 GGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCAG 3342579 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 ||||| |||||||| || || ||||| | || || || || |||||||| Sbjct 3342580 GTTGTAAGTCTCAATCACTCTCTCGATATCATCTCCCCAGATACCAACAGCAACACGCAT 3342639 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 | ||||||||| || | ||| |||| ||| | | || | | ||| || || Sbjct 3342640 GATCATGTGCTGTGGCCGTTCGACGACTTTGCCATCGAGCTTGAGGAGGTATGACCGCTC 3342699 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 ||| || || || || || || | ||| |||||||| || || | ||| |||||| Sbjct 3342700 CAAGGTCTTGAAGCCGAAGTATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTC 3342759 Query 63848 GAGTTTATCCTT 63859 ||| | ||||| Sbjct 3342760 GAGCTCTTCCTT 3342771 Score = 104 bits (114), Expect = 3e-17 Identities = 351/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | ||||| |||||||| || | || | | || || || |||||||| Sbjct 3340886 TCCTGGTCGACAGTGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATG 3340945 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 || ||||| ||||| || |||| ||| || ||||| || || | ||| | | Sbjct 3340946 CCAGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTG 3341005 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 || || || ||||| || | ||| || || ||||||||||| || | ||| ||| Sbjct 3341006 GGCTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCA 3341065 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 | ||| | | |||||| | || | | |||||| | || || || | ||| ||| Sbjct 3341066 GACATCTGCACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATA 3341125 Query 62223 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 || | || | | | | | ||||| || || ||| | || || ||||| | ||||| Sbjct 3341126 TCGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTC 3341185 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || | ||| ||| | |||| || | | || || || || || || || Sbjct 3341186 ATAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACC 3341245 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 || || || |||| | || | || ||| || ||| ||| || || || | || Sbjct 3341246 TGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCAC 3341305 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || || || |||| ||| || | || ||||| || ||||| ||||||| ||| || || Sbjct 3341306 TCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTG 3341365 Query 62460 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 |||| | |||| || || |||| || | || | || ||||| | ||| ||||| | Sbjct 3341366 TTTCGGATACCG--TGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGAGATCAG 3341423 Query 62518 ACGG 62521 | || Sbjct 3341424 AAGG 3341427 >seq1 Length=5395810 Score = 107 bits (118), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || ||||| ||| ||||||||||||||| | | || || |||||||| Sbjct 863545 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 863604 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || || ||||| || ||||| || ||||| ||||| | || Sbjct 863605 AAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCG 863664 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33471 |||||||| || || || ||||| ||||||| || | || | || || || Sbjct 863665 CTGAAGAAGATACCCTCAACAGCAGCGAAGGCAACCAGACGCTGGGCGTAGGTGGACTCG 863724 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 ||| |||||||| | ||||| ||||||||||| Sbjct 863725 TGGTCCGTGATCCACTTCAGGGCCCAGTCGGCCTTCTT 863762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944451245480