Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 190 2e-43 seq5 136 4e-27 seq1 136 4e-27 seq2 111 1e-19 seq4 105 6e-18 >seq3 Length=3828249 Score = 190 bits (210), Expect = 2e-43 Identities = 924/1444 (64%), Gaps = 27/1444 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||| || | |||||| ||| || | |||||| ||| | || Sbjct 3341237 TTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGC 3341296 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | || | |||||| |||||| |||| | Sbjct 3341297 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATC 3341356 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || || || || | ||||||| |||||| | | |||| | | | |||| ||||| Sbjct 3341357 AACAAGCTGTTTCGGATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAG 3341416 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGG-CGGG-GC 145295 || || ||| ||| |||||||||| || || || || || || | |||| | Sbjct 3341417 AGATCAGAAGGCTGGACGCCCCACATGTCATATTG-AAGCTGTCCCTGCGAGACGGGAGA 3341475 Query 145296 TGCCTTGAAAGGAACTG-TAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 | ||| | | | ||| || ||| | ||||||| |||||| ||| || | Sbjct 3341476 TCCCTCGTATGT--CTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAA 3341533 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || | || || |||||| || || |||| ||| | || ||| | ||| Sbjct 3341534 GCAGCATGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAGGGGACTCA 3341593 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | |||||||| || | || ||||| || || ||||| | || || || |||||| Sbjct 3341594 AAAGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGC 3341653 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534 | ||| ||||||||| | ||| || | || || | || || || || Sbjct 3341654 CTGTGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATC 3341713 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA 145594 || |||||||| || || || |||| || | | | | | | |||| | | Sbjct 3341714 TTGTTCAAGTTGCGAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAG 3341773 Query 145595 GCCTCGTCAACGACCACACA-GCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 | || | | ||| | ||| | || || || |||| || || || ||| Sbjct 3341774 TTGTTTTCGTAGTCAACATATGCTGGC-AGAGCAATGGAGGCCAGGTTGCAGACAGCCAC 3341832 Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||| || | | | ||| | | |||||||| ||||| ||| | ||||||||| Sbjct 3341833 CTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTCC 3341892 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 ||| || | ||| || || || | |||||| || ||||||||||||||| | || ||| Sbjct 3341893 CAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCC 3341952 Query 145774 AGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACCTGCTGC 145831 ||||| ||| | ||| | ||| || || || | ||| || || || Sbjct 3341953 GGTCTCGGTCTGGGCCTCGAGGATGG--CGTACCACAGCTTCTGAGCCTTCATGGTCTTG 3342010 Query 145832 TGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAA 145891 || |||||| ||| ||||| ||| ||| || |||| ||| || ||||||||| Sbjct 3342011 CGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCAT 3342070 Query 145892 TCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACG 145951 || | |||||||| |||| |||||| ||||| || | ||| ||||||| | || Sbjct 3342071 TCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACC 3342130 Query 145952 CGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCC 146011 |||| ||| || | || || | ||| || || | | |||||| || | ||| Sbjct 3342131 CGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCC 3342190 Query 146012 TCAGCACCCATGTTTCGCTT-CAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTT 146069 || ||| || ||| | ||||| || | ||| | ||| || |||||||| || | Sbjct 3342191 TCCTTACCG-TGGTTCTTTCGCAAATCGAGGA-ACTCAAAGACATCAGCGTGCCATGGCT 3342248 Query 146070 CAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCA 146126 | | |||| |||| || || || ||| ||||||||||| |||| ||| | Sbjct 3342249 CCAGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGGTCAACGTAACGGGCAG 3342308 Query 146127 TGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTA 146186 ||||||| ||||| || | |||||| || || | | |||||| ||| | || Sbjct 3342309 TGTTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTACCGGCTA 3342368 Query 146187 TTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGG 146246 | | ||| || ||| | | ||| || |||| || | ||| ||| | ||||| Sbjct 3342369 TATAAGAGCCAGTGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGCCATCTTGG 3342428 Query 146247 ATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCGAA 146303 | || |||||| ||| ||| || |||||||| || |||||||| || |||| | Sbjct 3342429 AGATCATGGCGCATGTC-TTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTC--A 3342485 Query 146304 TGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCG 146363 || ||| || ||||| || ||| ||| | | || || || || ||||| ||| | Sbjct 3342486 TGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCGTAG 3342545 Query 146364 GGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCT-TGA 146422 | ||||| || || | ||| | ||||| || || || || | ||| | Sbjct 3342546 GCGATGCGTGTGTGAAAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCAC-TCTCTCG 3342604 Query 146423 ATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCC 146482 || || || || || || | ||| || ||||||| |||||| || ||||| || | Sbjct 3342605 ATATCATCTCCCCAGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCGACG 3342664 Query 146483 ACTT 146486 |||| Sbjct 3342665 ACTT 3342668 >seq5 Length=3440085 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 3137825 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3137766 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| |||||||||||||| |||||| Sbjct 3137765 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGG 3137706 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||||| | || | ||| || | ||||| | Sbjct 3137705 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCCACC 3137646 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || || || ||||| ||||||||| Sbjct 3137645 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 3137598 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | || |||||||| || |||||||| ||| Sbjct 3138053 CCACCACGGAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 3137994 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 3137993 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 3137934 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||| |||| |||||||| Sbjct 3137933 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCGACC 3137874 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| || ||||| Sbjct 3137873 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 3137827 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| || | Sbjct 3138281 CCACCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 3138222 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || ||| |||| | |||||||||||| || ||| Sbjct 3138221 AGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3138162 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | || || | |||||| | Sbjct 3138161 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3138102 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | || || ||||| |||||||| Sbjct 3138101 TCCAGTGTTATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 >seq1 Length=5395810 Score = 136 bits (150), Expect = 4e-27 Identities = 348/515 (68%), Gaps = 15/515 (3%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG--CGA 46144 || ||| | || ||||| |||||||||| |||||||||||| | | ||| | | Sbjct 863774 CCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCAC--GGACCACGAGTCCA 863717 Query 46145 CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTT 46204 | | |||| ||||| |||| ||||| || ||| ||||| |||| || || || Sbjct 863716 CCTACGCCCAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTT 863657 Query 46205 TTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 | ||| ||||||| | | || || | || | | ||||| |||||||| || |||| Sbjct 863656 TCGCCTCCATCTTCTGGCTGAAGAAGCGCGGTC-TGATGCCTGGCCTGACCTTCTCCAAC 863598 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACT 46323 |||||||| || || |||||||| ||||| || ||||| || || || || | | || Sbjct 863597 GAGCTGATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTG--CCTGCTGT-TCTCT 863541 Query 46324 CGCGTGCACGACAAGCTTGCGCCCGACAC-CGTGCTGAGCATGTTCAAGGAGGCGGTGGC 46382 | | || | || || || | | | ||| || || ||| || || || || Sbjct 863540 CACCTG-AGGAACCGCCCCAGCAAGGCGCGCGTCGAGAAGATCATCACTGATGCCGTCGC 863482 Query 46383 CATTGAGAAGGAGTTTTTTACGGCCGCACTGCCC-GCTGCCCTGCTGGGCATGAACGCAC 46441 ||||||||||||||| | || | || || ||| || | ||||| ||||||||||| Sbjct 863481 CATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAG-TCTGCTCGGCATGAACGCCA 863423 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 | ||| | ||||||||||| || || ||||| || ||||| ||| | | Sbjct 863422 ACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCCCTTGGCAACG 863363 Query 46502 CGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGC 46560 |||| | | || | | ||| || || || || ||| | ||||||||||| | ||| Sbjct 863362 AGAAG-GTCTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGC 863304 Query 46561 AAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || ||||| ||||| ||||| || || Sbjct 863303 AAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 863269 >seq2 Length=4895233 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| ||| | || | ||| |||||| || |||||||| ||| Sbjct 4675595 CCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 4675536 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 4675535 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 4675476 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||| | Sbjct 4675475 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 4675416 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || || || || || || ||||| |||||||||| Sbjct 4675415 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGA 4675367 >seq4 Length=3484069 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || |||||| ||||| ||||||||||| ||| ||| Sbjct 949907 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 949848 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 949847 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 949788 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 949787 CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 949728 Query 131225 A 131225 | Sbjct 949727 A 949727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010717243520