Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20]
353 sequences; 44,725,953 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 2e-29
seq88 140 2e-28
seq72 140 2e-28
seq2 93.3 3e-14
>seq1
Length=5395810
Score = 143 bits (158), Expect = 2e-29
Identities = 202/284 (71%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260
||||| |||||||| ||| ||| || |||||||||| || ||||| ||||||||
Sbjct 690155 TTCTATCGCTACAAGATGGAGCGTCTCCAGACCAAGGTCGAAGGCAAGGGCAACGGTATC 690214
Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320
|| ||||||||||||||| || | ||||| || | |||| || |||| | |||||
Sbjct 690215 AAGACCGTCATTGTCAACCTGACCAGCGTCGCCCAGTCCCTCGCTCGTCCTGGCTCCTAC 690274
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| || | ||||| | ||||||||| |||||||| | |||| | ||| | ||
Sbjct 690275 TTGATCAAGTTCTTCGGTTTCGAACTTGGTGCTCAGACCAACATTGACCCCAAGGATGAT 690334
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| ||| | ||||| | ||| | ||| |||||| |||||| | ||||| |||
Sbjct 690335 CGCTGGATCATCAACGGTGCTCATGAGTCTAGCAAGCTCCAGGACCTTCTTGATATCTTC 690394
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
|| | ||||| || || || | | ||| | ||||| |||||
Sbjct 690395 ATCAGGAAGTTCGTTCTCTGCCACAAGTGCAAGAACCCCGAGAC 690438
>seq88
Length=6549
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6070 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6011
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6010 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5976
>seq72
Length=11655
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1162 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1221
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1222 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1256
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 5550 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 5609
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 5610 GCCCGTATTTAGCCTT 5625
>seq2
Length=4895233
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||||||| | ||||| ||||||||||| || || ||||| || ||
Sbjct 4675596 ACCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 4675537
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| || |||| || | || || ||||| || || ||||| || || |||| |||
Sbjct 4675536 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 4675477
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||| || |||||| ||| || ||| ||||| | || || || || ||
Sbjct 4675476 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCAC 4675417
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || ||||| | ||| || ||||| |||||||||
Sbjct 4675416 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 4675368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945758994343
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |