Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq88 140 2e-28 seq72 140 2e-28 seq2 93.3 3e-14 >seq1 Length=5395810 Score = 143 bits (158), Expect = 2e-29 Identities = 202/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260 ||||| |||||||| ||| ||| || |||||||||| || ||||| |||||||| Sbjct 690155 TTCTATCGCTACAAGATGGAGCGTCTCCAGACCAAGGTCGAAGGCAAGGGCAACGGTATC 690214 Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320 || ||||||||||||||| || | ||||| || | |||| || |||| | ||||| Sbjct 690215 AAGACCGTCATTGTCAACCTGACCAGCGTCGCCCAGTCCCTCGCTCGTCCTGGCTCCTAC 690274 Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || | ||||| | ||||||||| |||||||| | |||| | ||| | || Sbjct 690275 TTGATCAAGTTCTTCGGTTTCGAACTTGGTGCTCAGACCAACATTGACCCCAAGGATGAT 690334 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| | ||||| | ||| | ||| |||||| |||||| | ||||| ||| Sbjct 690335 CGCTGGATCATCAACGGTGCTCATGAGTCTAGCAAGCTCCAGGACCTTCTTGATATCTTC 690394 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || | ||||| || || || | | ||| | ||||| ||||| Sbjct 690395 ATCAGGAAGTTCGTTCTCTGCCACAAGTGCAAGAACCCCGAGAC 690438 >seq88 Length=6549 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6070 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6011 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6010 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5976 >seq72 Length=11655 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1162 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1221 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1222 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1256 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 5550 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 5609 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 5610 GCCCGTATTTAGCCTT 5625 >seq2 Length=4895233 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||||| | ||||| ||||||||||| || || ||||| || || Sbjct 4675596 ACCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 4675537 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || |||| || | || || ||||| || || ||||| || || |||| ||| Sbjct 4675536 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 4675477 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| ||| || ||| ||||| | || || || || || Sbjct 4675476 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCAC 4675417 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | ||| || ||||| ||||||||| Sbjct 4675416 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 4675368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945758994343