Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20]
353 sequences; 44,725,953 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 7e-28
seq15 114 3e-20
seq2 104 5e-17
>seq1
Length=5395810
Score = 140 bits (154), Expect = 7e-28
Identities = 248/362 (69%), Gaps = 0/362 (0%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 863287 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 863346
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | |||||| || |||| || ||||| ||||| ||||| |
Sbjct 863347 GACTTGTAGACCTTCTCGTTGCCAAGGGCGACGAGGAGACGGTCGGCCACGAACTCGATG 863406
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | | ||||||||| | || || || |||| |||||| | |
Sbjct 863407 TACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACTGCAGGGAAGAGCCTCAGTCAGG 863466
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802
|| ||||| || |||| || || || | || || || | ||| |
Sbjct 863467 AACTCCTTCTCAATGGCGACGGCATCAGTGATGATCTTCTCGACGCGCGCCTTGCTGGGG 863526
Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862
|||| ||| | ||| |||| || | | || | ||||||||||||||| |||
Sbjct 863527 CGGTTCCTCAGGTGAGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGA 863586
Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922
||| | ||||||||| | |||||||||||||| || || ||| | |||||||||
Sbjct 863587 GAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAG 863646
Query 251923 AT 251924
||
Sbjct 863647 AT 863648
>seq15
Length=682953
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211
||| || ||| || || | |||||||| ||||| ||||| || ||||| || || |||
Sbjct 323690 TCTCTGGGCTCTCGTATCGCCGTCATTGGCCCCAACGGTGCTGGAAAGTCCACTCTGATC 323749
Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271
|| ||||||||||| ||| | |||| || || ||||| || |||||
Sbjct 323750 AACGTCCTGACTGGTGAGCTCATCCCCACCGATGGTGAGATTTGGTCCCACGAGAACATC 323809
Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331
|| || || ||| || |||||||||||| ||||||||| ||||||||||||| |||
Sbjct 323810 CGTATCGCCTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACC 323869
Query 280332 CCTAACCAATACATTCAGTGGCG 280354
|| | | ||||| ||||||||
Sbjct 323870 CCATCCGAGTACATCCAGTGGCG 323892
>seq2
Length=4895233
Score = 104 bits (114), Expect = 5e-17
Identities = 250/367 (68%), Gaps = 16/367 (4%)
Strand=Plus/Plus
Query 87556 AAGAAGGCCGGCAATCTTCGCGATGCTTTTGC---CAAGACGAGCGCACCATTCTTTGTC 87612
|||||||| ||||| || || || || || || |||| ||| || ||||| | |
Sbjct 3046545 AAGAAGGCGGGCAACCTGCGGTGGGCGTTCGCGCGCACGACGGGCG-AC--TTCTTCGCC 3046601
Query 87613 ATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATG--CCA-TAC 87669
|||||||| || ||||||||||| ||| ||||||| || || | ||| | | |
Sbjct 3046602 ATCTTCGACGCCGACTTCTGCCCCCGCCCGGACTTCCTCCGCGAGCTGATGGTCGAGCAG 3046661
Query 87670 TTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGTCCA 87729
|| || | ||||| ||||||||||| |||| |||||||||||| || | | |
Sbjct 3046662 CTCGACGACGACAA---GATCGCCATCGTGCAGAGCCCCCAGTTCTTCCGCGT-CACCGA 3046717
Query 87730 -GACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCAT 87788
|| ||||| ||||| |||| | || || | ||||| ||||||||||| || |
Sbjct 3046718 TGAGCAGACCTGGGTCGAGCAGGGCGCCGGCGCCACGCAGGAGCTGTTCTACCGTGTCGT 3046777
Query 87789 CCAGGTGTCTCGCGAATCATTTGGCGCT-GCAGTGTGCGTGGGTACTTGTGCTATGTATC 87847
||||| || || | |||||| ||| | || || |||| | ||| |||| |
Sbjct 3046778 TCAGGTCAACCGGGACCGGTGGGGCGCTAGCA-TCTGTGTTGGTAGTAATGCGTTGTACC 3046836
Query 87848 GTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCC 87907
| || | ||||| | | | || || || |||||||| || ||| ||||||||| |
Sbjct 3046837 GCCGGGCTGCCCTTGAGGAGGTCGGTGGTACGGCTGAAATTGGGTTCTCCGAGGATGTGC 3046896
Query 87908 ACACCGG 87914
|||| ||
Sbjct 3046897 ACACGGG 3046903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027832151286873
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |