Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 140 7e-28 seq15 114 3e-20 seq2 104 5e-17 >seq1 Length=5395810 Score = 140 bits (154), Expect = 7e-28 Identities = 248/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 863287 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 863346 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | |||||| || |||| || ||||| ||||| ||||| | Sbjct 863347 GACTTGTAGACCTTCTCGTTGCCAAGGGCGACGAGGAGACGGTCGGCCACGAACTCGATG 863406 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | | ||||||||| | || || || |||| |||||| | | Sbjct 863407 TACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACTGCAGGGAAGAGCCTCAGTCAGG 863466 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| || |||| || || || | || || || | ||| | Sbjct 863467 AACTCCTTCTCAATGGCGACGGCATCAGTGATGATCTTCTCGACGCGCGCCTTGCTGGGG 863526 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 |||| ||| | ||| |||| || | | || | ||||||||||||||| ||| Sbjct 863527 CGGTTCCTCAGGTGAGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGA 863586 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||| | ||||||||| | |||||||||||||| || || ||| | ||||||||| Sbjct 863587 GAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAG 863646 Query 251923 AT 251924 || Sbjct 863647 AT 863648 >seq15 Length=682953 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || || | |||||||| ||||| ||||| || ||||| || || ||| Sbjct 323690 TCTCTGGGCTCTCGTATCGCCGTCATTGGCCCCAACGGTGCTGGAAAGTCCACTCTGATC 323749 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || ||||||||||| ||| | |||| || || ||||| || ||||| Sbjct 323750 AACGTCCTGACTGGTGAGCTCATCCCCACCGATGGTGAGATTTGGTCCCACGAGAACATC 323809 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| || |||||||||||| ||||||||| ||||||||||||| ||| Sbjct 323810 CGTATCGCCTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACC 323869 Query 280332 CCTAACCAATACATTCAGTGGCG 280354 || | | ||||| |||||||| Sbjct 323870 CCATCCGAGTACATCCAGTGGCG 323892 >seq2 Length=4895233 Score = 104 bits (114), Expect = 5e-17 Identities = 250/367 (68%), Gaps = 16/367 (4%) Strand=Plus/Plus Query 87556 AAGAAGGCCGGCAATCTTCGCGATGCTTTTGC---CAAGACGAGCGCACCATTCTTTGTC 87612 |||||||| ||||| || || || || || || |||| ||| || ||||| | | Sbjct 3046545 AAGAAGGCGGGCAACCTGCGGTGGGCGTTCGCGCGCACGACGGGCG-AC--TTCTTCGCC 3046601 Query 87613 ATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATG--CCA-TAC 87669 |||||||| || ||||||||||| ||| ||||||| || || | ||| | | | Sbjct 3046602 ATCTTCGACGCCGACTTCTGCCCCCGCCCGGACTTCCTCCGCGAGCTGATGGTCGAGCAG 3046661 Query 87670 TTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGTCCA 87729 || || | ||||| ||||||||||| |||| |||||||||||| || | | | Sbjct 3046662 CTCGACGACGACAA---GATCGCCATCGTGCAGAGCCCCCAGTTCTTCCGCGT-CACCGA 3046717 Query 87730 -GACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCAT 87788 || ||||| ||||| |||| | || || | ||||| ||||||||||| || | Sbjct 3046718 TGAGCAGACCTGGGTCGAGCAGGGCGCCGGCGCCACGCAGGAGCTGTTCTACCGTGTCGT 3046777 Query 87789 CCAGGTGTCTCGCGAATCATTTGGCGCT-GCAGTGTGCGTGGGTACTTGTGCTATGTATC 87847 ||||| || || | |||||| ||| | || || |||| | ||| |||| | Sbjct 3046778 TCAGGTCAACCGGGACCGGTGGGGCGCTAGCA-TCTGTGTTGGTAGTAATGCGTTGTACC 3046836 Query 87848 GTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCC 87907 | || | ||||| | | | || || || |||||||| || ||| ||||||||| | Sbjct 3046837 GCCGGGCTGCCCTTGAGGAGGTCGGTGGTACGGCTGAAATTGGGTTCTCCGAGGATGTGC 3046896 Query 87908 ACACCGG 87914 |||| || Sbjct 3046897 ACACGGG 3046903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832151286873