Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 187 5e-42 seq5 172 1e-37 seq4 134 3e-26 seq15 105 1e-17 >seq2 Length=4895233 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || |||||||| || | ||| || ||| ||| || |||||||| || |||||| Sbjct 4675595 CCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 4675536 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 4675535 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 4675476 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 4675475 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 4675416 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || |||||||||||||||||||| |||||||| ||| Sbjct 4675415 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 4675365 Score = 125 bits (138), Expect = 1e-23 Identities = 372/563 (66%), Gaps = 27/563 (5%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 |||||||| || |||||| ||| ||||| ||||| || || |||| |||| || Sbjct 3046903 CCCGTGTGCACATCCTCGGAGAACCCAATTTCAGCCGTACCACCGACCTCCTCAAGGGCA 3046844 Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACG---GCGCCGCCAAAGGTGTCGC 59411 | |||||||| | ||||| | || || || | | ||||| ||| ||| || Sbjct 3046843 GCCCGGCGGTACAA--CGCATTACTACCAACACAGATGCTAGCGCC-CCACCGGTCCCGG 3046787 Query 59412 GAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCC 59471 || |||| | || |||||||||||| ||||| || || || | |||| |||| Sbjct 3046786 TTGA--CCTGAACGACACGGTAGAACAGCTCCTGCGTGGCGCCGGCGCCCTGCTCGACCC 3046729 Query 59472 AAGTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGT 59531 | ||||| || | || ||||||||||||| ||||||| || ||||||||| ||| Sbjct 3046728 AGGTCTGCTCATCGGTGACGCGGAAGAACTGGGGGCTCTGCACGATGGCGATCTTGTCGT 3046669 Query 59532 CATGGGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591 | | | | | ||| | || |||| |||| ||||| || |||||||| || | Sbjct 3046668 CGTCGAGCTGCTCGACCATCAGCTCGCGGAGGAAGTCCGGGCGGGGGCAGAAGTCGGCGT 3046609 Query 59592 CGAAGATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCT 59651 |||||||||| |||||| | | || || | ||| || || |||||||| |||| Sbjct 3046608 CGAAGATGGCGAAGAAGTCGCCCGTCGTGCGCGCGAACGCCCACCGCAGGTTGCCCGCCT 3046549 Query 59652 TTTTCA--TGTGGTTGTTTTCACGGGTA--ATGTAATTGAAGCCAAACCGCTGGGCGAGA 59707 | || | | || | | | || | | ||||| |||||||| |||||| || || Sbjct 3046548 TCTTGAGCCGCGGCCG-GTCCCCGCGCACCATGTAGTTGAAGCCGTACCGCTCCGCCAGC 3046490 Query 59708 TCCCGGATCTTGGGGTCTTT---CTTGTCATCGAGGACATAGAC---AGTCTTG---GTG 59758 ||| | | ||| || | || ||||| || | || ||||| | Sbjct 3046489 CGCCGCACC---ACGTCCTTGGCCCCATCGTCGAGCACGTGCACCTGGATCTTGTCCGCC 3046433 Query 59759 GGCCAGTCTAGAGCAGTGACGTAGGTCCAGGTGTTGTGAATAACCTCGAGGTCTTCGCCG 59818 |||||||| || || || |||| |||| ||||||| | | |||||| || ||| || Sbjct 3046432 GGCCAGTCCAGCGCCGTCACGTGCTTCCACGTGTTGTCCAGGATCTCGAGCTCCTCGGCG 3046373 Query 59819 CACACGGGAAGAAGGATGTCTAC 59841 ||||| || || |||||| || Sbjct 3046372 CACACCGGCAGGTAGATGTCCAC 3046350 Score = 118 bits (130), Expect = 2e-21 Identities = 197/273 (72%), Gaps = 15/273 (5%) Strand=Plus/Plus Query 275303 GGTTTCAA-TATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCGG 275361 || ||||| || | ||||||| ||||||||| | |||||||| |||||||| ||| Sbjct 3046506 GGCTTCAACTACATGGTGCGCGGGGACCGGCCGCGGCTCAAGAAGGCGGGCAACCTGCGG 3046565 Query 275362 TCCGCCTTTACCAAGACAGACGG-CGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCC 275420 | || || | || ||||| ||| ||||| | |||||| ||||||||||||||||| Sbjct 3046566 TGGGCGTTCGCGCGCAC-GACGGGCGACTTCTTCGCCATCTTCGACGCCGACTTCTGCCC 3046624 Query 275421 AAGGCCCGACTTCCTC---GAGGAGACACTTG-GCAGGATGAAGGCAGATCCCACGATTG 275476 | || ||||||||| ||| || | | |||| || | | || || ||| | Sbjct 3046625 CCGCCCGGACTTCCTCCGCGAGCTGATGGTCGAGCAGCTCGACGAC-GA---CAAGATCG 3046680 Query 275477 CCATCTTCCAAACTCCCCAGTTCTT-CGAG-CAGCGCAATGAGCAGAACTACGTGGAGAA 275534 ||||| | || | ||||||||||| || | || || ||||||||| || || ||| | Sbjct 3046681 CCATCGTGCAGAGCCCCCAGTTCTTCCGCGTCACCG--ATGAGCAGACCTGGGTCGAGCA 3046738 Query 275535 GGGAGCCGGCGCCGTCCAGGAGCTCTTCTATCG 275567 ||| ||||||||| |||||||| ||||| || Sbjct 3046739 GGGCGCCGGCGCCACGCAGGAGCTGTTCTACCG 3046771 >seq5 Length=3440085 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||| || || || || | |||||||| || || ||||| || |||||||| | Sbjct 3138289 TTTACTGTCCACCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGT 3138230 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || |||| |||||||| |||||||| || ||||| ||||| | || |||| Sbjct 3138229 AGTCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGT 3138170 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | ||||| || || |||||||| |||||||| ||| ||| ||||||||||| | | Sbjct 3138169 CTGGTGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCCGAGG 3138110 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || |||| || || || |||||||| | ||||||||||| |||||||| Sbjct 3138109 ACTCCACCTCCAGTGTTATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || || ||||| || |||||||| || |||||| Sbjct 3138053 CCACCACGGAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 3137994 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || || Sbjct 3137993 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 3137934 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 3137933 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCGACC 3137874 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| || ||||| Sbjct 3137873 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 3137827 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||||| || |||||| Sbjct 3137825 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3137766 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || ||||| || || Sbjct 3137765 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGG 3137706 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| ||||| ||||| | || || || Sbjct 3137705 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCCACC 3137646 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||| ||||| |||||||| Sbjct 3137645 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3137599 >seq4 Length=3484069 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || | |||||| |||||||| || Sbjct 949905 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 949846 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 949845 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 949786 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 949785 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 949727 >seq15 Length=682953 Score = 105 bits (116), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225770 GCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCC 225829 ||||| | |||||| || ||| |||| ||| || || | | |||||| ||||| Sbjct 323100 GCGTCCAAGTCGTGCTCGACGAACACGGTCTTGACCTCATTTTGCTTGGGGAAACCCTCG 323041 Query 225830 AGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATG 225889 | ||| | || || ||||| | ||||| ||| || || |||||||||||| Sbjct 323040 ACCTGCTCGTTGTTGATAGCACGCATGAGGGTGGACTTTCCGGCACCGTTGGGACCGCAA 322981 Query 225890 AGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCA 225949 || ||||| | || ||||||| | ||| || ||| ||| ||||| |||||| || Sbjct 322980 AGACCGTAGCGTCGACCACGCTTGAGGCGGAGACGGGTGCTGTTGAGGAGAATCTTGGCA 322921 Query 225950 CCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTC 225987 || ||||| ||||||||||| || ||||| |||| ||| Sbjct 322920 CCGTAGGCGAGGGAGAACTCACACTCGCAGAGGTTCTC 322883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618333341160