Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 387 3e-102 seq1 282 8e-71 >seq3 Length=3828249 Score = 387 bits (428), Expect = 3e-102 Identities = 896/1339 (67%), Gaps = 35/1339 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | ||||| || |||||||||| ||| | || || Sbjct 3341236 GTTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGG 3341295 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||||| ||| || || |||||||| | || Sbjct 3341296 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCAT 3341355 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || || ||||| | | |||||| || ||| | || || || ||||| Sbjct 3341356 CAACAAGCTGTTTCGGATACCGTGCTCCTTGATC-----TTTGCCTTCAAAGCA-TCCCA 3341409 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | || |||| || | | || ||||||||||||| | || ||| | |||| Sbjct 3341410 ---GTCCCAGAGATCAGAAGGCTGGACGCCCCACATGTCATATTGAAGCTGTCCCTGCGA 3341466 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 |||||| |||||||| ||| |||| || ||||| || ||| | | || | | Sbjct 3341467 GACGGGAGATCCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGC 3341526 Query 244390 -GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 ||| | | | || | ||||||||||||||||||| ||||||| | ||| |||| Sbjct 3341527 AGTCAAAG-CAGCATGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAG 3341585 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | | || || |||| | || |||| | || || || ||||| || || | | Sbjct 3341586 GGGACTCAAAAGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACAC 3341645 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 | ||||| ||||||||| ||||| | | ||| || | ||||||||| |||| | Sbjct 3341646 CAATGGGCCTGTGTCGCATGTTGCTGTTGTATGCCTCCTT-CACGGGGTAGTGGTTGACA 3341704 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 || || | |||||| | |||||| | | || ||| ||| || |||| ||| Sbjct 3341705 TCAATGATCTTGTTCAAGTTGCGAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAG 3341764 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 | ||| || | || | | | | || | || | ||| | | | | Sbjct 3341765 TTGTAGCAGTTGTTTTCGTAGTCAA----------CATATGCTGGCAGAG--CAATGGAG 3341812 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||||||||||||| |||||||| || | ||||| || ||||||||||| ||| Sbjct 3341813 GCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGG 3341872 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| ||||||| || || ||| |||| ||||||||| |||||| Sbjct 3341873 TTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTG 3341932 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||||||||| ||||||||| |||||| |||||| | || ||| || | | Sbjct 3341933 TAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTC 3341992 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 |||||| | ||| |||| | ||| ||| |||||| |||||| |||||| Sbjct 3341993 TGAGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCG 3342052 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 |||||| || || || | |||||||||||| ||||||||||| |||| Sbjct 3342053 AACTCGTCACCGTAGCATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAG 3342112 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 |||||| | || |||| || |||||||||||| || ||||||||||| |||||||| Sbjct 3342113 TCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGG 3342172 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | || || ||| ||| || |||||| | || || | || |||||||| Sbjct 3342173 TCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACA 3342232 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || ||||||| ||||||| ||||| ||||| || || || |||||||| || |||||| Sbjct 3342233 TCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGG 3342292 Query 245168 TCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 || || | | || | |||||||| || || | || | || || || || Sbjct 3342293 TCAACGTAACGGGC-AGTGTTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGT 3342351 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA----CATGC 245282 ||||||||| || || || | ||| || | | || | | |||||| || | Sbjct 3342352 GCCGTTGGTACCGGCTATATAAGAGCCAGTGGC---GCGGATAC-GATGGACGTTCAGAC 3342407 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | || ||||| ||||||||| | |||||| |||||| || || || |||| Sbjct 3342408 CAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTAGATACCCT 3342467 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGC 245402 | |||||||| |||||||| || || ||||| || |||||||| |||| ||| | | Sbjct 3342468 CAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTAC 3342527 Query 245403 ACGAGTTGAACAGAGTGGG 245421 | ||||||||| || || Sbjct 3342528 CAGCGTTGAACAGCGTAGG 3342546 >seq1 Length=5395810 Score = 282 bits (312), Expect = 8e-71 Identities = 375/515 (73%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| |||||||| || || |||||| | | ||| | || Sbjct 863774 CCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCCACC 863715 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 | || | || | ||||| ||||| | || || ||||| ||||||||| || || ||| Sbjct 863714 TACGCCCAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTC 863655 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||||||||||||||||| ||| || ||| | |||||| || || |||||||| ||||| Sbjct 863654 GCCTCCATCTTCTGGCTGAAGAAGCGCGGTCT-GATGCCTGGCCTGACCTTCTCCAACGA 863596 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 || ||| | |||||||| ||||| | ||||| |||||||| |||||||| || Sbjct 863595 GCTGATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTC---TCA 863539 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 ||| ||| || ||| |||| ||| ||| | |||||||| || ||||| | || Sbjct 863538 CCTGAGGAACCGCCCCAGCAAGGCGCGCGTCGAGAAGATCATCACTGATGCCGTCGCCAT 863479 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCT 42991 |||||||||||||| || || | || ||| ||| ||||||||||| | |||| Sbjct 863478 TGAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACCT 863419 Query 42992 CATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCC 43050 ||| |||||||| ||| ||| ||||||| |||||| || | ||| || Sbjct 863418 GATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCCCTTGGCAACGAGAA 863359 Query 43051 GCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGA 43110 | ||||||| | | |||||||||||| |||||||||||||| | | ||||||| Sbjct 863358 G-GTCTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGA 863300 Query 43111 CCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||| ||||||||||| |||| ||||||||| Sbjct 863299 CCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 863265 Score = 140 bits (154), Expect = 6e-28 Identities = 230/327 (70%), Gaps = 11/327 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||| || ||| |||||| |||||||||||||| || ||||||| Sbjct 864162 ATGTACAAGAAGCACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTCTCCAAGGAT 864103 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || |||| || || | |||| || ||||||||| ||| || | ||| || Sbjct 864102 CTGCACGACTGG-AGCAACCGCCTGAATGATGACGAAAAGTACTTCATCTCTACCATCCT 864044 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| || || || || || ||||| |||||||||| | | |||| Sbjct 864043 TGCCTTCTTCGCTGCTTCCGATGGTATTGTCAACGAGAACCTGGTCGAGCGTTTCAGCGC 863984 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| || | |||||| || |||||||||||||||||||| || |||||| | Sbjct 863983 CGAGGTTCAAATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 863924 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||| ||| || ||||||| |||| |||||| ||| || | | |||| Sbjct 863923 TCACTCCGAGACATACTCC---CTGCTCATCGACACATACATCAAGGAGCCTGCCCAGCG 863867 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | || ||||| ||||| || || Sbjct 863866 CACCTACCTTTTCAATGCCATTGACAC 863840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335033103280