Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 129 1e-24 seq5 122 2e-22 seq1 113 1e-19 >seq2 Length=4895233 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | ||||| |||| ||||| || || ||||| || ||||||| | Sbjct 4675595 CCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 4675536 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||| ||||| || ||| Sbjct 4675535 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 4675476 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || || | || || || || Sbjct 4675475 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 4675416 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| |||||||| || || ||||||||||| |||||||| ||| Sbjct 4675415 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 4675365 >seq5 Length=3440085 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| ||||| || | || ||||| || ||| Sbjct 3138017 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 3137958 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| ||||| || |||||| || || || || |||||||| || | || ||| Sbjct 3137957 ATCAGGCGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 3137901 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| ||| || || || || || ||||| ||||| ||||| || |||||| Sbjct 3137900 TTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTG 3137841 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 3137840 ACGAAGATTTGCAT 3137827 Score = 114 bits (126), Expect = 3e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||| || || ||||| || || ||||| |||||| Sbjct 3138245 TCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAG 3138186 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || |||||||| || |||||| || || || ||||| || || ||| |||||||| Sbjct 3138185 ATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTT 3138127 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || || || || || || |||||||| || |||| |||||||| Sbjct 3138126 GTCGATGGTGTCCGAGGACTCCACCTCCAGTGTTATCGTCTTTCCCGTCAATGTCTTGAC 3138067 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 3138066 GAAGATCTGCAT 3138055 >seq1 Length=5395810 Score = 113 bits (124), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 || || |||||| | ||| ||| | || || | || |||| ||||| ||| | || Sbjct 863477 GAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACCTG 863418 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAA 269232 ||||| || || ||||| |||||||| || ||| || || || || || | ||||| Sbjct 863417 ATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCCCTTGGCAACGAGAAG 863358 Query 269233 GTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACG 269292 || ||||| || | || ||||||| ||| ||||| || || || | || ||||| Sbjct 863357 GTCTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACC 863298 Query 269293 AACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGTAATG 269340 ||||||||||| ||||||||| | ||||| || | | || ||||| ||| Sbjct 863297 AACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCC-GGTGTCATG 863250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649064644334