Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20]
353 sequences; 44,725,953 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 1e-24
seq5 122 2e-22
seq1 113 1e-19
>seq2
Length=4895233
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | | ||||| |||| ||||| || || ||||| || ||||||| |
Sbjct 4675595 CCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 4675536
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || ||||||||||| ||||| || |||
Sbjct 4675535 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 4675476
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || || || || || | || || || ||
Sbjct 4675475 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 4675416
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || ||||| |||||||| || || ||||||||||| |||||||| |||
Sbjct 4675415 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 4675365
>seq5
Length=3440085
Score = 122 bits (134), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| ||||| ||||| || | || ||||| || |||
Sbjct 3138017 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 3137958
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||| ||||| || |||||| || || || || |||||||| || | || |||
Sbjct 3137957 ATCAGGCGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 3137901
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || |||| ||| || || || || || ||||| ||||| ||||| || ||||||
Sbjct 3137900 TTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTG 3137841
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 3137840 ACGAAGATTTGCAT 3137827
Score = 114 bits (126), Expect = 3e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | ||||| || || ||||| || || ||||| ||||||
Sbjct 3138245 TCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAG 3138186
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401
|| |||||||| || |||||| || || || ||||| || || ||| ||||||||
Sbjct 3138185 ATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTT 3138127
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || || || || || || || |||||||| || |||| ||||||||
Sbjct 3138126 GTCGATGGTGTCCGAGGACTCCACCTCCAGTGTTATCGTCTTTCCCGTCAATGTCTTGAC 3138067
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 3138066 GAAGATCTGCAT 3138055
>seq1
Length=5395810
Score = 113 bits (124), Expect = 1e-19
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172
|| || |||||| | ||| ||| | || || | || |||| ||||| ||| | ||
Sbjct 863477 GAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACCTG 863418
Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAA 269232
||||| || || ||||| |||||||| || ||| || || || || || | |||||
Sbjct 863417 ATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCCCTTGGCAACGAGAAG 863358
Query 269233 GTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACG 269292
|| ||||| || | || ||||||| ||| ||||| || || || | || |||||
Sbjct 863357 GTCTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACC 863298
Query 269293 AACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGTAATG 269340
||||||||||| ||||||||| | ||||| || | | || ||||| |||
Sbjct 863297 AACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCC-GGTGTCATG 863250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179649064644334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |