Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq5 105 7e-18 seq4 89.7 6e-13 >seq2 Length=4895233 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||| | || | ||||||||||| || || ||||| || | || || || || Sbjct 4675583 CGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 4675524 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||||| || | || ||||||| Sbjct 4675523 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 4675464 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| | || | |||| | | | ||||| || ||||| || | ||||| Sbjct 4675463 TCC-TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGAT 4675405 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || ||||| || ||||| || ||||| ||||| Sbjct 4675404 GGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 4675369 >seq5 Length=3440085 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || |||||| || || ||||| |||| ||| ||||| | Sbjct 3138270 ACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCC 3138211 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||| |||||||| ||||| ||||||||||| | ||| | | |||||| Sbjct 3138210 ATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTT 3138151 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | | ||| | | | ||||| || ||||| || | || | Sbjct 3138150 GTCC-TGAATCTTGCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTTA 3138092 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || ||||| | ||||| || ||||| ||||| Sbjct 3138091 TCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 Score = 102 bits (112), Expect = 9e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| |||||||| Sbjct 3137790 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 3137731 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||||| | || | | |||||||||| ||| | || | |||| || Sbjct 3137730 GATCAAACGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 3137673 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | ||||| || ||||| |||| |||||||| ||||| || || ||||| Sbjct 3137672 TTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTC 3137613 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 3137612 ACGAAGATCTGCAT 3137599 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || || || Sbjct 3138018 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 3137959 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 3137958 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3137900 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | |||||||| ||||| || || ||||| | Sbjct 3137899 TGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 3137840 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 3137839 CGAAGATTTGCAT 3137827 >seq4 Length=3484069 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||| || || | || || |||||||| || ||||| | Sbjct 949907 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 949848 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 949847 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 949788 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 949787 CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 949728 Query 42199 AG 42200 || Sbjct 949727 AG 949726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210403073520