Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 217 1e-51 seq1 118 1e-21 seq5 91.5 1e-13 seq2 86.0 6e-12 >seq3 Length=3828249 Score = 217 bits (240), Expect = 1e-51 Identities = 985/1545 (64%), Gaps = 35/1545 (2%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || |||||||| || | ||| |||| | || | || ||| | | Sbjct 3341235 GGTTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATG 3341294 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| || || || | |||| |||||| |||||| |||| Sbjct 3341295 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCA 3341354 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 |||||| || || | |||||| | || | ||||||| || | ||| |||| Sbjct 3341355 TCAACAAGCTGTTTCGGATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCC 3341414 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 | || | || || || ||||||||| || || | | ||| | | ||||| Sbjct 3341415 AGAGATCAGAAGGCTGGACGCCCCACATGTCATATTGAAGCTGTCCCTGCGAGACGGGAG 3341474 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCG 153327 || | | || ||| |||||| | ||| | ||||| || | | Sbjct 3341475 ATCCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAG 3341534 Query 153328 CGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGT 153387 | ||| ||| ||||| ||| ||| ||||| || || | || || | ||| Sbjct 3341535 CAGCATGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAGGGGACTCAA 3341594 Query 153388 ACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTC 153447 | |||||||| || || ||||| || || |||||||||| ||| || || ||||| | Sbjct 3341595 AAGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCC 3341654 Query 153448 GATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGATAATT 153506 || | ||||||| || ||| | | ||| ||||| ||| ||| || || Sbjct 3341655 TGTGTCGCATGTTGCTGTTGTATGC-CTCCTTCACGGGGTAGTGGTTGACATCAATGATC 3341713 Query 153507 TTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG-- 153564 ||||| | |||||| || || || | || | | | | || | || ||| | ||| Sbjct 3341714 TTGTTCAAGTTGCGAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAG 3341773 Query 153565 -TCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | |||||| | | | || || | | || ||||| || ||||| || ||||| || Sbjct 3341774 TTGTTTTCGTAGTCAACATATGC-TGG---CAGAGCAATGGAGGCCAGGTTGCAGACAGC 3341829 Query 153623 CGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGAC 153682 | ||| || | | | ||||| | |||||||| ||| |||||| || ||| Sbjct 3341830 CACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGT 3341889 Query 153683 GCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 153742 |||| || | ||| ||||| ||||| ||||| || || ||| |||||||| | || Sbjct 3341890 TCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTT 3341949 Query 153743 GCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAGGTCCTGCGCTCGCACCCGCT 153801 |||||||||| || | |||| ||| | || ||| | ||| || || || Sbjct 3341950 GCCGGTCTCGGTCTGGGCCTCGAGGATGG-CGTACCACAGCTTCTGAGCCTTCATGGTCT 3342008 Query 153802 GCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGC 153861 || |||||| || |||||||| ||||||||| ||| |||||||| ||||||| Sbjct 3342009 TGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGC 3342068 Query 153862 AGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTG- 153920 | || || |||||||| |||| | || ||||| || | ||| |||| |||| Sbjct 3342069 ATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCA------GTCGCCGTTCT 3342122 Query 153921 -----ACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975 || || |||||| || || || | |||||| || | ||||||||| ||| Sbjct 3342123 TCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCC 3342182 Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCC 154035 | |||||| || ||| | || || ||| | | ||| || ||||||| Sbjct 3342183 GGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCC 3342242 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGC 154092 | || || | ||||| || | ||||| |||||| || ||||| || |||| | Sbjct 3342243 ATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGGTCAACGTAAC 3342302 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT-- 154150 | | | ||||||||||| || | |||||| | || ||| ||||||||||| Sbjct 3342303 GGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTAC 3342362 Query 154151 CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCC 154210 || | || | ||| |||||| | |||| ||||| | ||||| || ||| | Sbjct 3342363 CGGCT--ATATAAGAGCCAGTGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGC 3342420 Query 154211 GTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGT 154269 ||| || || ||||| ||| || || |||||| || || ||||| || | Sbjct 3342421 CATCTTGGAGATCATGGCGCATGTC-TTGAGAGTATCGTAGATACCCTCAATGCTGTCAT 3342479 Query 154270 CGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGA 154329 | | | ||| | ||| || || ||| || || | | || || || || | Sbjct 3342480 CCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACA 3342539 Query 154330 GGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGT 154389 | || || ||||| || || | ||| || ||||| | ||| || || || | | Sbjct 3342540 GCGTAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCAC-T 3342598 Query 154390 CT-TCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGT 154448 || ||||||||||| || || || | || || ||||||| ||||||||| || ||| Sbjct 3342599 CTCTCGATATCATCTCCCCAGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGT 3342658 Query 154449 TCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAA 154508 ||| ||||| | || | ||| | ||| ||| || | ||| ||| | ||||| Sbjct 3342659 TCGACGACTTTGCCATCGAGCTTGAGGAGGTATGACCGCTCCAAGGTCTTGAAGCCGAAG 3342718 Query 154509 TACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553 || | ||| | || ||| | |||| | ||||||| |||||| Sbjct 3342719 TATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTCGAGC 3342763 >seq1 Length=5395810 Score = 118 bits (130), Expect = 1e-21 Identities = 344/519 (66%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| | || || ||||| | ||||| ||||||||||| | | || || Sbjct 863777 GTTCCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCC 863718 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || ||| |||| |||| |||||||| || ||||| | || || ||| || Sbjct 863717 ACCTACGCCCAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGG-TGC 863659 Query 52446 TTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||| ||||||| | | || | | || | ||||| |||||||| ||| ||| Sbjct 863658 TTTCGCCTCCATCTTCTGGCTGAAGAAGCGCGGTCTGATGCCTGGCCTGACCTTCTCCAA 863599 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGA 52563 |||| |||| || || ||||| || |||||||| ||||| || ||||| || | | Sbjct 863598 CGAGCTGATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCTCA 863539 Query 52564 CGCGCGTGACCG----AAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCG 52619 | | | |||| | || || || | || || || || ||| || || Sbjct 863538 CCTGAGGAACCGCCCCAGCAA--GG---CG--CGCG-TCGAGAAGATCATCACTGATGCC 863487 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 || || || || |||||||| | || | || || || | ||||| ||||||||| Sbjct 863486 GTCGCCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAAC 863427 Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739 || | ||| ||||||||||||| ||||| || ||||| | || | | || Sbjct 863426 GCCAACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTCGT-CGCCCTTGG 863368 Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | ||| || ||| | ||| || || || || ||| | ||||| || |||| Sbjct 863367 CAACGAGAAGGTCTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 863308 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| ||||| || || Sbjct 863307 CGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 863269 >seq5 Length=3440085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| || |||||||||||| Sbjct 3137825 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3137766 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| | |||||| ||||| ||||| Sbjct 3137765 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGG 3137706 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||||| | ||||||| Sbjct 3137705 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATAGTGTCAGAAGACTCCA 3137648 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || ||||| || || || || || |||||||||| Sbjct 3137647 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGG 3137597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || ||||||||||| | Sbjct 3138281 CCACCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 3138222 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || || || | |||| |||||||| ||||| || || Sbjct 3138221 AGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3138162 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | |||| | | |||||| | ||||||| Sbjct 3138161 ATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGTTGT-CGATGGTGTCCGAGGACTCCA 3138104 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||| || || |||| || || || || |||||||| Sbjct 3138103 CCTCCAGTGTTATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 >seq2 Length=4895233 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || ||||||||| || || |||| | Sbjct 4675560 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 4675501 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| || ||||| ||||| || || || || || ||||| ||| | || | || || Sbjct 4675500 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGACAT 4675442 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||||||||| | || | || || || || || || || Sbjct 4675441 TG-TCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTG 4675383 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 4675382 ACGAAGATCTGCATG 4675368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260210242160