Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 279 6e-70 seq1 107 2e-18 >seq3 Length=3828249 Score = 279 bits (308), Expect = 6e-70 Identities = 1172/1830 (64%), Gaps = 39/1830 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||||||||| ||| |||| | |||||||||||||| || || ||||| | Sbjct 3340899 TGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATGCCAGTTTTGAGAC 3340958 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTC-CATG 115644 || |||||||| | | ||||| | | |||| | || || || | |||| Sbjct 3340959 CCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTGGG-CTCACGCATG 3341017 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||| | | || || || ||||||||| || || || || | ||| | | Sbjct 3341018 TGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCAGACATCTG---C 3341074 Query 115705 ACATCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 ||| | || ||| | | |||||| || || |||| | ||| ||||| | ||| Sbjct 3341075 ACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATATCGGCCGGG 3341134 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 || ||| || |||||||| ||| || | | || | | ||||||| ||| Sbjct 3341135 ATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTCATAGCCTCA 3341194 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| |||||||||| | || ||| | | ||| | ||||| || || Sbjct 3341195 GACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGG----TTGACGACCTGGAA 3341250 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 ||| || || || |||| | | |||||||| | ||||||||||| |||||||| || Sbjct 3341251 CTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCACTCGTT 3341310 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| |||| || || | |||||| || || |||||||||||||| | | |||||| || Sbjct 3341311 GTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTGTTTCG 3341370 Query 115998 GAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT-GTCT 116056 || ||| | || | || | |||| | || |||||||| || || | | || Sbjct 3341371 GATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGA-GATCAGAAGGCT 3341429 Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116 | ||||||| ||| | || || || || || | || |||||||| |||||| Sbjct 3341430 GGACGCCCCACATGTCATATTGAAGCTGTCCCTGCGAGACGGGAGATCCCTCGTATGTCT 3341489 Query 116117 CATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 116176 |||||||| ||||||| || | ||| | ||| | || || || || || | Sbjct 3341490 GGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCAGCATGGTAGATGG 3341549 Query 116177 TCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCAC 116235 |||| || || | |||| || | | |||| ||| ||||| | | ||| Sbjct 3341550 TCTCGAAGATCTGTTTGTTCAGCTGGCGAG-CCTCAGGGGACTCAAAAGGCATGCGGAGA 3341608 Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 | || |||| || ||||| |||||||| | ||||| || | |||| ||| || Sbjct 3341609 GCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCCTGTGTCGCATGTTG 3341668 Query 116296 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 || || || |||||| || || ||| || | | | || | || Sbjct 3341669 CTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGA 3341728 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415 || |||| |||| || || || | | | | | | | | | || | | Sbjct 3341729 ACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAGTTGTTTTCGTAGTCA 3341788 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||||| || || || || || ||||| || || |||| |||||| | || | Sbjct 3341789 ACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAG 3341848 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 ||||| || || || || |||| || || || ||||| |||| |||||| || || Sbjct 3341849 TACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTG 3341908 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||| ||| || ||||||||||||||||| | || | || ||||| || |||| | Sbjct 3341909 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCC 3341968 Query 116596 TTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTG-GCTCGCC-CCTCC 116652 | ||| || || | ||| | | || | | || || ||| ||| | ||| ||| | Sbjct 3341969 TCGAGGATGGCGTACCACAGCTTCTGAGCCTT---CA-TGGTCTTGCGGCCGCGGCCTTC 3342024 Query 116653 TC-CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCT-CTGAGAGCCCTG 116710 || ||||||||| ||| || ||||| ||||| ||||| ||| | | | || || | Sbjct 3342025 TCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGT-AGCATTCAGCAAGGCCGG 3342083 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | || | || || | ||| | ||| | || || |||||||||||||||||||| Sbjct 3342084 GGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGA 3342143 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 |||| || |||||||| || |||||| || || || | || || | || || | Sbjct 3342144 GGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGT 3342203 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | ||||| || | || || | || ||| |||||||| || |||||||| | |||| Sbjct 3342204 TCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGA 3342263 Query 116891 TTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 | || |||| |||| |||||| || || | || || ||| || | Sbjct 3342264 AAGCACCAG---GACGCTTGTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGA 3342320 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004 | |||||||| ||||||||||||| || ||| || || || ||| ||| Sbjct 3342321 CACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAG 3342380 Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064 |||| | || | |||| || || ||||||||| || ||| ||| ||||| |||| Sbjct 3342381 TGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGC 3342440 Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124 | | ||||| | ||||||| || || || |||| |||| | ||| |||||||| Sbjct 3342441 ATGTCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGC 3342500 Query 117125 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184 | ||||| || ||| ||||||||||||||||| || || || | ||||| ||| Sbjct 3342501 ATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGA 3342560 Query 117185 ACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAA 117244 | | || |||||| | ||| ||||| | || || || || || | Sbjct 3342561 AAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCACTCTCTCGATATCATCTCCCCAGA 3342620 Query 117245 TACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC 117304 |||| | | || ||||| | ||||| || || ||| | | | ||||||||| Sbjct 3342621 TACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCGACGACTTTGCCATCGAGCT 3342680 Query 117305 TCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 | ||||||| | |||||||||||||| Sbjct 3342681 TGAGGAGGTATGACCGCTCCAAGGTCTTGA 3342710 >seq1 Length=5395810 Score = 107 bits (118), Expect = 2e-18 Identities = 300/458 (66%), Gaps = 28/458 (6%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 863268 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 863327 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | || || | | | |||| |||| |||| Sbjct 863328 GAAGTCGAAGGGGTTGGTGGACTTGTAGACCTTCTCGTTG-----CCAAGGGCGACGAGG 863382 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| || | ||| |||| ||||||| |||| | | |||||| |||| || Sbjct 863383 AGACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGA 863442 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 | || || || || || | |||| ||||||||||| | || || || || |||| Sbjct 863443 CTGCAGGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGGCATCA-GT--GATG 863499 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG- 127520 || | || || | | | || | || | | |||| | ||| Sbjct 863500 ------ATCTTCTCGACGCGCGCCTTGCTGGGGCGGTTCCTCAGGTGAGAGAACAGCAGG 863553 Query 127521 ----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 | || || ||| |||||||||||||| ||||| || || || |||||| ||| Sbjct 863554 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGG 863613 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || ||||| ||||| |||||||||| |||||| || | || | || ||||||| Sbjct 863614 CCAGGCATCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAG 863673 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGC 127674 || ||||| ||| ||||| |||| ||||||| ||| Sbjct 863674 ATACCCTCAACAGCAGCGAAGGCAACCAGACGCTGGGC 863711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504492899480