Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 152 8e-32 seq3 105 1e-17 >seq1 Length=5395810 Score = 152 bits (168), Expect = 8e-32 Identities = 337/500 (67%), Gaps = 13/500 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | ||| || |||||||| |||| ||||| Sbjct 863283 CTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTT 863342 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | || || ||| |||| || || || | || | | ||| ||||| || | Sbjct 863343 GGTGGACTTG-TAGACCTTCTCGTTGCCAAGGGCGACGAGGAGACGGTCGGCCACGAACT 863401 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 ||||||| || | |||| | | ||| || || ||||| || ||| || || || Sbjct 863402 CGATGTA-CTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACTGCAGGGAAGAGCCTCA 863460 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 | ||| |||||||||||||| |||| || || || | |||| | ||| || | | Sbjct 863461 GTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGATGATCTTCTCGACGCGCGCCTTG 863520 Query 159887 CCCGGC---TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | || || | || ||| ||||| ||||| || |||||| |||||| Sbjct 863521 CTGGGGCGGTTCCTCA------GGTGAGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGA 863574 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| |||||||| | ||||||||| | | | ||||| ||||| | || ||| Sbjct 863575 CCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCGCGCTTC 863634 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 || ||||| || |||| || ||||||||||| || ||||| ||||| || || || || Sbjct 863635 TTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAG 863694 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || || || | || | | | || | | ||| | ||||| | |||||| || Sbjct 863695 GCAACCAGACGCTGGGCGTAGGTGGACTCGTGGTCCGTGATCCACTTCAGGGCCCAGTCG 863754 Query 160124 GCCTTCTTTGCGATGCACGG 160143 |||||||| |||||| || Sbjct 863755 GCCTTCTTACGGATGCAGGG 863774 >seq3 Length=3828249 Score = 105 bits (116), Expect = 1e-17 Identities = 328/496 (66%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGG-CGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||||||||||| || | || | ||||| | | || ||||||||| Sbjct 3340888 CTGGTCGACAGTGAACTGAATGGGCGCTGCCGCC--GCCTGAGTGCGGAGGTAGTACATG 3340945 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || || || || ||| || ||| ||| | ||||||| || | |||| || || Sbjct 3340946 CCAGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTG 3341005 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || |||||| ||||| |||||||| ||||||||| ||||| || || || || Sbjct 3341006 GGCTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATG-AAGGCACCACGGTCAGC 3341064 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 | ||| | | ||| ||| |||| || | ||||| || |||||| ||| | || | Sbjct 3341065 AGACATCTGCACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGAT 3341124 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | || | || | || || ||| || || | ||||| || | | || Sbjct 3341125 ATCGGCCGGGA-TGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCT 3341183 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | |||| ||||| | |||| || |||| |||| | || |||||||| | Sbjct 3341184 TCATAGCCTCAGACCACA-GACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACG 3341242 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | ||||| | ||| | | | ||| |||| |||| ||||| Sbjct 3341243 ACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAG 3341302 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | |||||| | ||| || || |||||||| |||| | || | Sbjct 3341303 CACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAG 3341362 Query 204314 GAGTTGCGCACACCGT 204329 ||| || | ||||| Sbjct 3341363 CTGTTTCGGATACCGT 3341378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151691377680