Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 192 6e-44 seq5 131 2e-25 seq2 125 7e-24 seq4 111 2e-19 >seq1 Length=5395810 Score = 192 bits (212), Expect = 6e-44 Identities = 335/481 (70%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 863284 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 863343 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||| | || ||||||| || | ||||||||||||| Sbjct 863344 GTGGACTTGTAGACCTTCTCGTTGCCAA---GGGCGACGAGGAGACGGTCGGCCACGAAC 863400 Query 132742 TCGATGTATTGCGACAT-GGTTTCGCAATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTT 132799 |||||||| ||| ||| | || || || | || ||||||| ||| || || || | Sbjct 863401 TCGATGTACTGCTTCATCAGGTTGGC-GTTCATGCCGAGCAGACTGCA-GGGAAGAGCCT 863458 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | || || || | ||| |||||||| || || |||| ||| | | ||||||||| Sbjct 863459 CAGTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGATGATCTTCTCGACGCGCGCCT 863518 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| || || | | || || ||||| || ||| || |||||| |||| |||| Sbjct 863519 TGCTGGGGCGGTTCCTCAGGTGAGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCT 863578 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | || || || |||||| ||| |||| ||| ||||| || ||||| || || | Sbjct 863579 CGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCA 863638 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| ||||||| || ||||||| ||||| || || ||||| || | Sbjct 863639 GCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCAA 863698 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 |||| |||| | || | |||| || | | | |||||| ||| ||||| ||||||| Sbjct 863699 CCAGACGCTGGGCGTAGGTGGACTCGTGGTCCGTGATCCACTTCAGGGCCCAGTCGGCCT 863758 Query 133100 T 133100 | Sbjct 863759 T 863759 Score = 122 bits (134), Expect = 9e-23 Identities = 195/277 (70%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 863887 GTATGTGTCGATGAGCAGGGAGTATGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 863946 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 |||||| ||||| || ||||| | || || || | || ||||||||||||||| | Sbjct 863947 GCCGTAGAAGCAACGGGCCTCAGGGATTTGAACCTC-GGCGCTGAAACGCTCGACCAGGT 864005 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | |||||||| || || ||| || ||||| ||||| || | | |||||| | Sbjct 864006 TCTCGTTGACAATACCATCGGAAGCAGCGAAGAAGGCAAGGATGGTAGAGATGAAGTACT 864065 Query 133346 GCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||| || |||| ||| | ||||||| || |||||||| || || | ||||| Sbjct 864066 TTTCGTCATCATTCAGGCGGTTGCTCCAGTCGTGCAGATCCTTGGAGAGATCAATCTCCT 864125 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || | ||||| || || |||||| || |||||||| Sbjct 864126 CGGCAGTCCAGAAGGAAGCCTCGTGCTTCTTGTACAT 864162 >seq5 Length=3440085 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| | || |||||| || || Sbjct 3137827 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 3137886 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 3137887 GACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 3137945 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || |||| ||||||||| ||||||||| Sbjct 3137946 GCAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 3138005 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || ||||| || || Sbjct 3138006 CATCCAGAAGGAGTCTACTCTCCACTTGGTTCTCCG 3138041 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | | Sbjct 3137599 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 3137658 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| |||||||| || | ||||| Sbjct 3137659 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCA 3137717 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| ||||| || |||| ||||||||| ||||||||| Sbjct 3137718 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 3137777 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || | || || ||| | | ||||| Sbjct 3137778 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTCCGTGGCGG 3137825 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || || || || | || || ||| || | Sbjct 3138055 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATAACACTGGAGGTGGAGTCCTCG 3138114 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || || | ||||| ||||| || || | |||| Sbjct 3138115 GACACCATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCAGACC 3138172 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| || || ||| |||| || | || || || ||||||| Sbjct 3138173 AGCAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCCGGACGCTGTCTGACTACA 3138232 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || ||||| |||||||| ||| || | || || Sbjct 3138233 ACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 3138281 >seq2 Length=4895233 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||||||| | || || ||| || | Sbjct 4675369 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTCG 4675428 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || ||| ||||||| Sbjct 4675429 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 4675488 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 4675489 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 4675548 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || || || | ||| |||| Sbjct 4675549 ATCCAGAAGGAGAGC-ACCCTTCACCTCGTGTTGCG 4675583 >seq4 Length=3484069 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | | Sbjct 949727 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 949786 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 949787 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 949846 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 949847 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 949906 Query 38433 G 38433 | Sbjct 949907 G 949907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170592987520