Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq109 149 5e-30 seq6 86.0 5e-11 seq2 86.0 5e-11 >seq109 Length=4663 Score = 149 bits (164), Expect = 5e-30 Identities = 209/290 (72%), Gaps = 5/290 (2%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT-CC 518085 |||||||| ||||||||||| | ||| ||| || |||| |||| |||||| || Sbjct 2129 TCAAAATCATCACCTCCCAAAGCATTATCTCCAGAAGTAGAAAGCACTTC-AAAAGTACC 2071 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || | | || | || || |||||| ||||| || || | ||||| | | | Sbjct 2070 GTCAACCAAAGTTAGAATAGAAACATCAAAAGTTCCTCCTCCTAAGTCAAACACTAAAAT 2011 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 || ||||||||| ||| |||| |||||| | || |||||| ||||||||||| Sbjct 2010 GGTCTGTTCTTTGTCACC---TTTGTCAACACCATAAGAAAGAGCAGCTGCAGTTGGTTC 1954 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 |||||||| | |||||| | || |||||| | ||||||||||| || || ||||| Sbjct 1953 GTTAATAATACGTTCAACATTTAAGCCTGCAATTTTACCTGCATCTTTGGTAGCCTGTCT 1894 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 ||| | ||| |||||||| |||||||||||||| || || | | |||||| Sbjct 1893 TTGAGCATCATTAAAATAAGCAGGAACAGTAATTACTGCCTTACTTACTT 1844 Score = 118 bits (130), Expect = 8e-21 Identities = 414/638 (65%), Gaps = 40/638 (6%) Strand=Plus/Minus Query 517096 ATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTCAAA 517155 ||||||| |||||| | ||||| | |||||||| |||||| || || Sbjct 3054 ATTTTCTGCTTCATTACGAACATCAATACTTTCTTTTTTCAAACGATCTGCCTCAGCATT 2995 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTC----AGAGAATCTTCCGCGAT 517211 ||||| ||||||||||||||||| | ||||| ||||| || | | || | | Sbjct 2994 TTCTTCGGCTTCTCTAATCATTCTTTTAATTTCTTCTTCTTTAAGGGCA----CCAC--T 2941 Query 517212 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 517271 | | | ||||||||| || | |||||| || | || ||| | || | Sbjct 2940 TCCT-GAAATAGTAATTTTTTGTTCTTTGTTAGTGCCTAAGTCTTTGGCTTTAACTGATA 2882 Query 517272 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 517331 ||| ||||| ||||||| ||||| || |||||||||||||| | || | | || | Sbjct 2881 CAATTCCATTTGCATCCAGGTCAAAAGTAACTTCAATTTGAGGAATTCCGCGAGGTGCTG 2822 Query 517332 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 517391 |||| || || || | ||| |||||| | | |||||||| | || |||| Sbjct 2821 GTGGAATATCTGTTAATTGGAATCTTCCCAAAGTTTTATTATCAGCTGCTAAAGGACGTT 2762 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 | || | |||| || ||| ||| | | |||||| |||| ||||| ||| ||| Sbjct 2761 CTCCTTGTAAAACATGAATATCTACTGCTGGTTGATTGTCTGCGGCAGTTGAAAAGACT- 2703 Query 517452 TGGATTTTTTACA---AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508 || ||||||| | ||||| || || ||||| ||||| | || || | | | || Sbjct 2702 TG--TTTTTTAGATGTTGGAATAGTAGTATTTCTTTCAATTAATTTAGTAAAGACATTAC 2645 Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 517568 || ||||| | || | |||||| ||||| ||||| | || | ||||| || || | Sbjct 2644 CTAAAGTTTCAATTCCTAAAGAAAGTGGAGTTACATCTAAAAGTAAAATATCTTTAACGT 2585 Query 517569 TTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628 | | ||| ||||| || ||||||||||||| ||| ||||| ||| Sbjct 2584 CTCC-------TGA-----TAGAATTCCTCCTTGAATAGCAGCTCCAATAGCAACTACTT 2537 Query 517629 CATCAGGATTAACAGTTTCATT--TAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTG 517686 |||| ||||||| | | | ||| |||||||| | ||| | ||| || || Sbjct 2536 CATCGGGATTAATACTCTTATTAGGAGTTTTTTTCAATT----CACTTTTAACTAA---A 2484 Query 517687 TCTT--ACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 |||| || ||||||||||| || || |||||||| Sbjct 2483 TCTTGAACTGCAGGAATACGAGTAGAACCACCAACTAA 2446 Score = 98.7 bits (108), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 322163 GAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttA 322222 |||||||| ||||| || ||||||||||| | || | | | | | ||| ||| Sbjct 2051 GAAACATCAAAAGTTCCTCCTCCTAAGTCAAACACTAAAATGGT-----CTGTTCTTTGT 1997 Query 322223 TTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATT 322282 || ||| ||| | ||| || | |||||| |||||||||||||| ||||| || Sbjct 1996 CACC-TTTGTCA------ACACCATAAGAAAGAGCAGCTGCAGTTGGTTCGTTAATAATA 1944 Query 322283 TTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCA 322342 ||||| ||| || ||||||||| | | ||| || || ||||| || || ||| Sbjct 1943 CGTTCAACATTTAAGCCTGCAATTTTACCTGCATCTTTGGTAGCCTGTCTTTGAGCATCA 1884 Query 322343 TTAAAATATGCTGGTACAGTAATAACTGCTTTA 322375 |||||||| || || |||||||| ||||| ||| Sbjct 1883 TTAAAATAAGCAGGAACAGTAATTACTGCCTTA 1851 >seq6 Length=3351076 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 || || || |||||| || |||| || ||||||||||| ||||| ||| | ||||| ||| Sbjct 801084 GGCAAGGAGGGTCGTCTTCGAGGTAACTTGATGGGAAAGCGTGTGGATTTCTCTGCCCGT 801025 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || ||||| |||| | |||||| |||| | ||||| ||||| || Sbjct 801024 ACCGTCATTACAGGTGATGCAAATATTTCTCTGGACGAAGTCGGTGTACC 800975 >seq2 Length=4895233 Score = 86.0 bits (94), Expect = 5e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 366994 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 367053 || || |||||||| || ||||||||||| ||| ||||||| |||||| | |||| || Sbjct 1211057 GTTGTTGCCACAATCGCTTTTGGTATGGGCATTGATAAACCTGATGTTCGCTTTGTGATA 1210998 Query 367054 CATTATGGAGCTCCCAAGAATATT-GAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||| || | ||||||| || || ||||| || || || |||| || |||| ||||| Sbjct 1210997 CATCAT-TATCTCCCAAAAAGCTTGGAAGGCTACTACCAGGAAACAGGACGAGCCGGTCG 1210939 Query 367113 TGATGG 367118 ||||| Sbjct 1210938 AGATGG 1210933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780804882977218