Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 306 4e-78 seq1 96.9 4e-15 >seq3 Length=3828249 Score = 306 bits (338), Expect = 4e-78 Identities = 1160/1802 (64%), Gaps = 45/1802 (2%) Strand=Plus/Plus Query 105558 TGAACTGAATTGGGCGC-GCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGT 105616 |||||||||| |||||| ||| |||| || ||||| |||||||| || || ||||| Sbjct 3340899 TGAACTGAAT-GGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATGCCAGTTTTGAGA 3340957 Query 105617 CCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTC-CAT 105675 || | ||||| || | ||||| || || |||| ||| || || || | ||| Sbjct 3340958 CCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTGGG-CTCACGCAT 3341016 Query 105676 GAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAAT 105735 | | || | | || |||||| |||||| |||||| | || | ||| | | Sbjct 3341017 GTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCAGACATCTGCA- 3341075 Query 105736 GACATCCTTCATCTTG---ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGG 105792 || | || ||| | | |||||| || || ||| | | ||||||||| | || Sbjct 3341076 --CAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATATCGGCCGG 3341133 Query 105793 GATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852 ||| | ||| || || || ||||| | | | || | | ||||||| ||| Sbjct 3341134 GATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTCATAGCCTC 3341193 Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTC 105912 ||||| |||||||||| | || || ||| || |||||| | | ||||| Sbjct 3341194 AGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACCTGGAACTC 3341253 Query 105913 TCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATT 105972 || || || | || | | |||||||| | ||||| || || ||||| || || || Sbjct 3341254 GCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCACTCGTTGTT 3341313 Query 105973 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 106032 |||| || || | ||||| || || ||||| ||||||||||| | ||||| || | Sbjct 3341314 GCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTGTTTCGGAT 3341373 Query 106033 ACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCA 106090 ||| | |||||||| | |||| | | |||||||||| || || | || | | Sbjct 3341374 ACCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGA-GATCAGAAGGCTGGA 3341432 Query 106091 CCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCA 106150 | ||||||| ||| |||||||| || || || |||||| ||||| |||||| Sbjct 3341433 CGC-CCCACATGTCATATTGAAGCTGTCCCTGCGAGACGGGAGATCCCTCGTATGTCTGG 3341491 Query 106151 TAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTT 106210 || | || | | | || | || || ||| || | || || || ||||| Sbjct 3341492 TATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCAGCATGGTAGATGGTC 3341551 Query 106211 TCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA 106270 || ||||| | |||| || || ||| || ||||| | |||| Sbjct 3341552 TCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAGGGGACTCAAAAGGCATGCGGAGAGCC 3341611 Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 | || |||| || ||||| || ||||| | |||||| || ||||||||||| || Sbjct 3341612 AAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCCTGTGTCGCATGTTGCTG 3341671 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA-CTCGGTTTAGATTTTTGGT 106389 || || || ||||| || || ||||||| || | | || ||| Sbjct 3341672 TTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG----TTGCG 3341727 Query 106390 AACAAT---CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||||| || |||| || || || | | | | | || | | ||| | Sbjct 3341728 AACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTA---GCAGTTGTTTTCGTA 3341784 Query 106447 G---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATC 106503 | ||||| ||| || || || || |||| ||||| |||||| |||||| | | Sbjct 3341785 GTCAACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGC 3341844 Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 |||||| | || || || |||| |||||| || || || |||| ||||| || Sbjct 3341845 ACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTG 3341904 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||||| |||||| |||||||||||||||||| |||| | || ||||| ||||| Sbjct 3341905 GTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTG 3341964 Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTC 106679 | || ||| || || | ||||| | || | | || |||| ||| ||| || | Sbjct 3341965 GGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTC----ATGGTCTTGCGGCCGCGGC 3342020 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 | || ||||||||| ||| || || || ||||| ||||| || | || | Sbjct 3342021 CTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCATTCAGCAAGGC 3342080 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 | || || || || || | || | ||| | || || ||||||||||||||||| Sbjct 3342081 CGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGA 3342140 Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 106859 | ||||| |||||||| |||| ||||| || | ||| |||| || | ||| | Sbjct 3342141 AGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGT 3342200 Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 |||| ||| || || |||||||| | || ||| |||||||||||||| || |||| | Sbjct 3342201 GGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAG 3342260 Query 106920 CGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 106973 ||| || || ||||| ||| | || | || || || || ||| ||| | Sbjct 3342261 CGAAAGCACC---AGGACGCTTGTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGA 3342317 Query 106974 ATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT 107033 | || |||||||| ||||| ||||||| ||| || || || || ||| ||| Sbjct 3342318 AGACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGC 3342377 Query 107034 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 107093 | |||| | | | ||||| || || |||||||| || ||| ||| ||||| | Sbjct 3342378 CAGTGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGG 3342437 Query 107094 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 107153 | || | | ||||| | |||||||| | || ||| ||||| || ||| |||| Sbjct 3342438 CGCATGTCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGA 3342497 Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213 |||| |||| ||| || ||||||||||| ||||| || || || | |||||| Sbjct 3342498 AGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTG 3342557 Query 107214 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 |||| | || |||||| || ||| ||||| | || || || || || || Sbjct 3342558 TGAAAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCACTCTCTCGATATCATCTCCCC 3342617 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGA 107333 ||| || | || |||||||| | ||||| || || ||| | || ||||||||| Sbjct 3342618 AGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCGACGACTTTGCCATCGA 3342677 Query 107334 GC 107335 || Sbjct 3342678 GC 3342679 >seq1 Length=5395810 Score = 96.9 bits (106), Expect = 4e-15 Identities = 293/453 (65%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 863269 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 863328 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100 ||||| || || || | | || | | | | || |||| ||||| Sbjct 863329 AAGTCGAAGGGGTTGGTGGACTTGTAGACCTTCTCGTTG-----CCAAGGGCGACGAGGA 863383 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 |||| || | ||| |||| ||||||| |||| | | |||||| |||| ||| Sbjct 863384 GACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGAC 863443 Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 | || || || || || | |||| | |||||||| | || || || | | ||| Sbjct 863444 TGCAGGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGATGATCT 863503 Query 117221 CGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | || | | |||| | || | || ||| ||| ||| || | Sbjct 863504 TCTCGACGCGCGCCTTGCTGGGGCGGTTCCTCAGGTGAGAGAACAGCAGGCAGGCGAAGT 863563 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| |||||||| || || || || || || || |||||| ||||| ||||| | Sbjct 863564 CGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCA 863623 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||||| ||| | || | | ||| | ||| ||||||||||||||| | Sbjct 863624 GACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAA 863683 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 || || || |||| || |||| |||| ||| Sbjct 863684 CAGCAGCGAAGGCAACCAGACGCTGGGCGTAGG 863716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978196709720