Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 138 3e-27 seq5 134 3e-26 seq4 111 3e-19 seq3 102 2e-16 >seq2 Length=4895233 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || |||||||| ||| ||| || || || ||||| |||| || || | Sbjct 4675587 GAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 4675528 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| || |||||||| || || || ||||| || || ||||| || Sbjct 4675527 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTC 4675468 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| ||||| || |||||| || || ||||||||||| ||||| |||||||| Sbjct 4675467 CTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGT 4675408 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || ||||| | ||||| Sbjct 4675407 GATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 4675369 >seq5 Length=3440085 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | || || | |||||||| | ||| Sbjct 3138258 GTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCATCTTCCAACTG 3138199 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || |||||||| || || || || ||||| ||||| || Sbjct 3138198 CTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTT 3138139 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || ||||||||||| ||||| || || || | ||||||||| || Sbjct 3138138 GCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTTATCGTCTTTCCCGT 3138079 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 3138078 CAATGTCTTGACGAAGATCTGCAT 3138055 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| ||||| || || || ||||| |||| || || | || || || Sbjct 3138036 AACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 3137977 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| || || || |||||||| || ||||| || ||||| || Sbjct 3137976 GAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 3137917 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || || ||||| || || || ||||| || | ||||| Sbjct 3137916 GATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTT 3137857 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 3137856 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 3137827 >seq4 Length=3484069 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| ||||||||||| || |||||||| Sbjct 949905 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 949846 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || ||||| || || ||||| || ||||| || || || |||||| || || Sbjct 949845 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 949786 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| || || || |||||||| | ||||| || |||| || || ||||| Sbjct 949785 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 949727 >seq3 Length=3828249 Score = 102 bits (112), Expect = 2e-16 Identities = 238/357 (67%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGAT--GCGAAAAAGCCCGGAGGTGATGACCTGA 160571 ||||||| ||| ||||||| || ||||| |||||| | || | || | || | Sbjct 3342243 TGGCACGCTGATGTCTTTGAGTTCCTCGATTTGCGAAAGAACCACG--GTAAGGAGGAGG 3342186 Query 160572 TGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGA 160631 | | ||| | || | ||| ||| |||||| | | || || ||||||||| | || Sbjct 3342185 TCCGGGCCCGCGACCTCTTCCTTGCCCTCTGGATTCCTGACCTCTTCATGAAGCGGGTTG 3342126 Query 160632 AAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTT 160691 | | || || || |||| ||| | || ||||| || || || |||| ||| | Sbjct 3342125 AGAAGAACGGCGACTGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCTGAATGCT 3342066 Query 160692 ATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGG 160751 | ||| |||||||||| |||| || || | ||||| | ||| || | | | ||| Sbjct 3342065 ACGGTGACGAGTTCGAGGCTCTGTACGAGAAGTACGAGAGAGAAGGCCGCGGCCGCAAGA 3342006 Query 160752 TCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGC 160811 | ||||||| || | |||||| | |||||| | ||||| |||| || | | Sbjct 3342005 CCATGAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACC 3341946 Query 160812 CCTTTATCGCATACAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 |||| || |||||||||||| | |||||||| |||||||||||| | |||| Sbjct 3341945 CCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 3341889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476582022751