Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq109 129 5e-24 >seq109 Length=4663 Score = 129 bits (142), Expect = 5e-24 Identities = 310/463 (67%), Gaps = 32/463 (7%) Strand=Plus/Plus Query 552123 GTGCTT---GTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT 552179 |||||| |||||||| ||||| | |||||| | ||| || || |||| | Sbjct 2440 GTGCTTTTAGTTGGTGGTTCTACTCGTATTCCTGCAGTTCAAGA----TTTAGTTAAAAG 2495 Query 552180 TTCAATGGTAAAAAATTA--AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTG 552237 | ||| | |||||| | ||| | ||| ||||||| ||||| | ||||| ||| | Sbjct 2496 TG-AATTGAAAAAAACTCCTAATAAGAGTATTAATCCCGATGAAGTAGTTGCTATTGGAG 2554 Query 552238 CCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTAC 552297 | || ||||||| || ||||| || ||| || | ||| ||||| ||| Sbjct 2555 CTGCTATTCAAGGAGGAATTCTATCAGGA------GACGTTAAAG------ATATTTTAC 2602 Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357 || ||||||| ||||| || ||| | || | ||||| | || | | | ||||| Sbjct 2603 TTTTAGATGTAACTCCACTTTCTTTAGGAATTGAAACTTTAGGTAATGTCTTTACTAAAT 2662 Query 552358 TTATCGATAGAAATACTACTATTCCT---TGTAAAAAATCTCGTGTATTTTCTACGTATT 552414 | || || ||||||||||||||||| | ||||||| | || ||||| || Sbjct 2663 TAATTGAAAGAAATACTACTATTCCAACATCTAAAAAA---CAAGTCTTTTCAACTGCCG 2719 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 |||| |||||| | || || ||||| |||| |||||||| | || | | Sbjct 2720 CAGACAATCAACCAGCAGTAGATATTCATGTTTTACAAGGAGAACGTCCTTTAGCAGCTG 2779 Query 552475 ATAATAATCAACTT--GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGT 552532 ||||||| ||||| || | || | ||| || |||||| || || ||||| ||| | Sbjct 2780 ATAATAA--AACTTTGGGAAGATTCCAATTAACAGATATTCCACCAGCACCTCGCGGAAT 2837 Query 552533 ACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATT 552575 || ||||||||||||||||| || | ||||| ||||||||| Sbjct 2838 TCCTCAAATTGAAGTTACTTTTGACCTGGATGCAAATGGAATT 2880 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 |||||||| ||||| || || ||||||||||| | ||| | || ||||| |||||||| Sbjct 1855 GCAGTAATTACTGTTCCTGCTTATTTTAATGATGCTCAAAGACAGGCTACCAAAGATGCA 1914 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| || | |||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 1915 GGTAAAATTGCAGGCTTAAATGTTGAACGTATTATTAACGAACCAACTGCAGCTGCTCTT 1974 Query 550520 GCATATGGACTTGATAAA 550537 | ||||| |||| ||| Sbjct 1975 TCTTATGGTGTTGACAAA 1992 Score = 93.3 bits (102), Expect = 3e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||| |||||||| | | ||| || |||||||||||||| || |||||| | | Sbjct 1987 CAACACCATAAGAAAGAGCAGCTGCAGTTGGTTCGTTAATAATACGTTCAACATTTAAGC 1928 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || ||||| ||||||| || || || | ||| |||||||||||||| ||||||| Sbjct 1927 CTGCAATTTTACCTGCATCTTTGGTAGCCTGTCTTTGAGCATCATTAAAATAAGCAGGAA 1868 Query 361821 CAGTAATCACTGCTTT 361836 ||||||| ||||| || Sbjct 1867 CAGTAATTACTGCCTT 1852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029277331767970