Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 367 2e-96 seq1 156 8e-33 >seq3 Length=3828249 Score = 367 bits (406), Expect = 2e-96 Identities = 1026/1551 (66%), Gaps = 45/1551 (3%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| || ||||| |||||| ||||| | | | |||||| | ||| | | || Sbjct 3341023 GTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCAGACATCTGCACAATCGT 3341082 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 |||||||||| ||||| ||||||||| | | | |||| || | |||| || ||| Sbjct 3341083 CCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATATCGGCCGGGATGCTGGG 3341142 Query 212816 GATGTTCTGCACAGACCCC-CTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 ||||||||| | ||| || || | || | | | | ||| |||| ||| Sbjct 3341143 GATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTT---CATAGCCTCAGACCA 3341199 Query 212873 GAGGCCCCTGGTCTC-CAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTG 212931 || || | ||| |||| | ||| || |||||||| | |||||| || || | Sbjct 3341200 CAGACCAATC-TCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACCTGGAACTCGCCAG 3341258 Query 212932 AGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCA 212991 ||||| | | |||||| | ||| || ||||| ||||||| || ||||||||| |||| Sbjct 3341259 CAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCA 3341318 Query 212992 GAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGT 213051 ||||||| | ||| || || |||||||| |||| || | ||||| | | |||| Sbjct 3341319 GAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTGTTTCGGATACCGT 3341378 Query 213052 GCTCGCCGATGA--GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 |||| ||| | | | |||| |||||||||| |||| ||| Sbjct 3341379 GCTCCTTGATCTTTGCCTTCAAAGCAT--CCCAGTCCCAGAGATCAGA-AGG-------- 3341427 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTC-ACGGGGCTGCCCTGGTAAG 213168 || ||| |||||||||| | || ||| || | ||| ||||| |||| ||| | Sbjct 3341428 CTGGACGCCCCACATGTCATATTG-AAGCTGTCCCTGCGAGACGGGAGATCCCTCGTATG 3341486 Query 213169 AGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGA 213228 ||| ||||| | ||||||| | ||||| ||||| || ||||| | ||||| Sbjct 3341487 TCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCAGCATGGTAGA 3341546 Query 213229 TGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA 213288 |||| || || |||| |||| |||| ||||| |||||| || ||||| | Sbjct 3341547 TGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAGGGGACTCAAAAGGCATGCGGA 3341606 Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348 ||| ||||||| || |||||||| || | || ||||| ||||||| || || Sbjct 3341607 GAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCCTGTGTCGCATGT 3341666 Query 213349 TAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGC 213408 | ||| | ||||| || |||||| |||| || ||||||||||| | ||||| Sbjct 3341667 TGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGC 3341726 Query 213409 GGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCT 213468 | | || | |||||| | | || | || | ||| | || | ||| | Sbjct 3341727 GAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAGTTGTTTTCGTAGT 3341786 Query 213469 GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTG 213528 ||| | | ||||| || ||| |||||||||||| || |||||||| | || | Sbjct 3341787 CAACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCAC 3341846 Query 213529 TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGT 213588 |||||| ||||||||||||||||||||| || |||||||| |||||||||| |||| Sbjct 3341847 AGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGT 3341906 Query 213589 TTGACTTTGCGTTGGCAGA-ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 | ||| ||| | |||| |||||||||||||||| ||||| |||||||| |||| Sbjct 3341907 TGCTCTT-GCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGG 3341965 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 | | | || || | ||| || | | ||||| | | || | || ||| | Sbjct 3341966 GCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCATG----GTCTTGCGGCCGCGGCC 3342021 Query 213708 GTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTC 213765 | | |||||||| ||||| || | | ||| |||| || || | | | | || | Sbjct 3342022 TTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCATTCAG-CAAGGC 3342080 Query 213766 CCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATG 213824 | || || ||| ||||||||| ||||||| |||| | |||| || | || |||| Sbjct 3342081 CGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCA-ACCCGCTTCATG 3342139 Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884 || ||||| || | ||| || || ||| ||||| | || || ||| ||| || Sbjct 3342140 AAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCG 3342199 Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944 ||| || |||| ||| || || ||||||| || |||||||| ||||||| |||||| Sbjct 3342200 TGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATA 3342259 Query 213945 GCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAG 214001 || || || || || | |||| || |||||||| || | ||| |||||||| Sbjct 3342260 GCGAAAGCACCAGGACGCTTGTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAG 3342319 Query 214002 ATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCG 214061 | || || | ||| | | || || ||| |||||||| || |||||||| ||||| Sbjct 3342320 ACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCA 3342379 Query 214062 GAGGCCCTCAGGTTGCTCATGGAG----AGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 | ||| | || | | ||||| || || || || ||||| |||||||||||| Sbjct 3342380 GTGGCGC---GGATACG-ATGGACGTTCAGACCAATACCTCCGGCCATCTTGGAGATCAT 3342435 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA 214177 |||||| | | | ||| || ||| || | ||||||||||| | | || | | Sbjct 3342436 GGCGCATGTCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGACGAG 3342495 Query 214178 GAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGG 214228 |||||| ||| ||||| ||| || | |||| |||||| ||||| || Sbjct 3342496 GAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCGTAGG 3342546 >seq1 Length=5395810 Score = 156 bits (172), Expect = 8e-33 Identities = 345/514 (67%), Gaps = 5/514 (1%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 863265 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 863324 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | || | Sbjct 863325 CATGAAGTCGAAGGGGTTGGTGGACTTGTAGACCT-TCTCGTTGCCAAGGGCGACGAGGA 863383 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || ||| |||||||||| | ||| ||| || ||||||||| | || Sbjct 863384 GACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGAC 863443 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | ||||| || || ||||||||||| || ||||| || | |||| Sbjct 863444 TGCAGGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGATGATCT 863503 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 || ||||| | || ||| ||| | |||||| | | |||| |||||| | Sbjct 863504 TCTCGACGCGCGCCTTGCTGGGGCGGTTCCTCAGGTGAGAGA---ACAGCAGGCAGGCGA 863560 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| |||||| || ||||| || ||| ||| ||||||||||| || ||||||| Sbjct 863561 AGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCA 863620 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | | || | || || |||||||| || | ||||||| || ||||||||| |||| Sbjct 863621 TCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCT 863680 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || || ||||| || || | || || | | | | | ||| | |||||| Sbjct 863681 CAACAGCAGCGAAGGCAACCAGACGCTGGGCGTAGGTGGACTCGTGGTCCGTGATCCACT 863740 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || |||||||| |||||||| |||||| || Sbjct 863741 TCAGGGCCCAGTCGGCCTTCTTACGGATGCAGGG 863774 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||| ||||||||| | ||||||| | Sbjct 863913 TCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGGGCCTCAGGGA 863972 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 || || || | | ||| | ||| | ||| ||||| ||||| || ||||| ||||||| Sbjct 863973 TTTGAACCTCGGCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATACCATCGGAAGCAG 864032 Query 48549 CAAAGAAGGCAAGGA 48563 | ||||||||||||| Sbjct 864033 CGAAGAAGGCAAGGA 864047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528689611520