Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 251 1e-61 seq1 163 5e-35 >seq3 Length=3828249 Score = 251 bits (278), Expect = 1e-61 Identities = 868/1331 (65%), Gaps = 51/1331 (4%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 || ||||| | || ||| || |||| | | ||| | |||||||| |||| ||| Sbjct 3341477 CCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCA 3341536 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAA 221484 || |||||||||||||| |||||| ||||| || || | ||||| || || || Sbjct 3341537 GCATGGTAGATGGTCTCGAAGATCTGTTTGTTCAG-CTGGCGAGCCTCAGGGGACTCAAA 3341595 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 ||||| || || | ||| | || || || ||||| || || | ||| |||||||| Sbjct 3341596 AGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCCT 3341655 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||||| | ||||| | || || |||||| || |||||| || || | || Sbjct 3341656 GTGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTT 3341715 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||| | ||| || || ||| |||| ||| | || ||| ||| | || Sbjct 3341716 GTTCAAGTTGCGA------AC---AACGACCTGGGTGACCTCGTGGAGATG---CTGGAA 3341763 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 | | || || || | || ||| | || || |||| | ||||||||| || Sbjct 3341764 GTTGTAGCAGTTGTTTTCGTAGTCAACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCA 3341823 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 || |||||||| || |||| |||||||| || || |||||| || Sbjct 3341824 GACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCG 3341883 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||||| || || || |||||| ||| || |||||||||||||| || Sbjct 3341884 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 3341943 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 ||| ||| ||||| ||| ||| | || || || ||| || | |||| || ||| Sbjct 3341944 GGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCT-TCTGAGCCTTCA 3342002 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATAC--CCGGTATAGAGCATGTCAAACT 221960 ||| | | | || ||| ||| | || ||| | ||| ||||| | | |||| Sbjct 3342003 TGGTCTTGCGGCC-GCGGCCT---TCTCTCTCGTACTTCTCGTACAGAGCCT--CGAACT 3342056 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 |||||||| || | ||||| || ||| | ||| ||||| || |||||| Sbjct 3342057 CGTCACCGTAGCATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGC 3342116 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 ||| | | |||| || |||||||||||| || ||||| || || | ||||| || | Sbjct 3342117 CGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGC 3342176 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 || ||| ||||||| |||| ||| || | || ||| | |||||||| | |||| Sbjct 3342177 GGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAG 3342236 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 ||||||| |||||||| |||| || | ||| || || |||||||| |||||||| | || Sbjct 3342237 CGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGGT-CA 3342295 Query 222201 CCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCG 222259 | | ||| | |||||||| ||||| | || | | || || || ||| Sbjct 3342296 ACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCG 3342355 Query 222260 TTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-CAGACATGCCGATA 222316 ||||| || || || | || ||| | || ||| ||| | || || ||| Sbjct 3342356 TTGGTACCGGCTATATAAGAGCCAGTGGCGC---GGATACGATGGACGTTCAGACCAATA 3342412 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 || ||||| || |||||||||||||| |||||||||| || ||| ||||| || Sbjct 3342413 CCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTAGATACCCTCAATG 3342472 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 ||| ||||| | || | || || || ||||||| ||||| | || | || ||| Sbjct 3342473 CTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCG 3342532 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGT---AAAGTAGCCCCTAGACATCAGATCGTACGTC 222493 || |||||||| || |||||||| ||| | | | |||||||| | ||| ||| Sbjct 3342533 TTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGC---GACATCAGGTTGTAAGTC 3342589 Query 222494 TCTACGACTCTGGCGATGT--TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGT 222551 || | ||||| |||| | | ||||| | | || || | |||| ||||| Sbjct 3342590 TCAATCACTCTCTCGATATCATCTCCCCAGATACCAACA--GCAACACGCATGATCATGT 3342647 Query 222552 ACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGA 222607 ||| |||| || || ||| || | ||||| ||| ||||| || |||| Sbjct 3342648 GCTGTGGCCGTTCGAC--GACTTTGCCATCGAGCT--TGAGGAGGTATGACCGCTCCAAG 3342703 Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGC 222667 |||||||| || ||||| | | | | ||||||| | | | || | ||| | ||| ||| Sbjct 3342704 GTCTTGAAGCCGAAGTATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTCGAGC 3342763 Query 222668 TCCGACTTGTG 222678 || |||||| Sbjct 3342764 TCTTCCTTGTG 3342774 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||||| | | |||||| | |||||| ||| | || Sbjct 3341236 GTTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGG 3341295 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | ||| ||||| ||||||||||||| Sbjct 3341296 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCAT 3341355 Query 221236 CAGCAGACTGTTGCG 221250 || || ||||| || Sbjct 3341356 CAACAAGCTGTTTCG 3341370 >seq1 Length=5395810 Score = 163 bits (180), Expect = 5e-35 Identities = 349/520 (67%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| ||||| | |||||| |||||| |||||||||||| ||| ||| | || Sbjct 863774 CCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCC-AC 863716 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 | | | |||| ||||| ||||| |||||||| ||||| ||||| ||||||||| | || Sbjct 863715 CTACGCCCAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTT 863656 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||||||||| ||| || || ||||| || ||| ||| |||||||| Sbjct 863655 CGCCTCCATCTTCTGGCTGAAGAAGCGCGGTCTGATGCCTGGCCTGACCTTCTCCAACGA 863596 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||| ||| | ||||||||||| |||| || || ||||||||||| | | | || Sbjct 863595 GCTGATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTC---TCA 863539 Query 26049 CTTGCTCCACAAACCTTCTC----AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGG 26104 | || | |||| | | | | | |||| | | ||||||| || || || | Sbjct 863538 CCTG----AGGAACCGCCCCAGCAAGGCGCGCGTCGAGAAGATCATCACTGATGCCGTCG 863483 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 || ||||||||||| | | ||||||||| || Sbjct 863482 CCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCA 863423 Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACT 26222 || |||| || ||||| |||| |||||||||| ||| || || ||| || || Sbjct 863422 ACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCC--CTTGGCAA 863365 Query 26223 CGCCAGACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAG 26281 || | ||||| ||| | || ||||| |||||||| ||||| ||||| || | | | Sbjct 863364 CGAGAAGGTCTACAAGTCCACC-AACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 863306 Query 26282 GGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | |||||||||||||| || ||| | ||||| ||||| || Sbjct 863305 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 863266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840701472320