Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20]
353 sequences; 44,725,953 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3 251 1e-61
seq1 163 5e-35
>seq3
Length=3828249
Score = 251 bits (278), Expect = 1e-61
Identities = 868/1331 (65%), Gaps = 51/1331 (4%)
Strand=Plus/Plus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425
|| ||||| | || ||| || |||| | | ||| | |||||||| |||| |||
Sbjct 3341477 CCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCA 3341536
Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAA 221484
|| |||||||||||||| |||||| ||||| || || | ||||| || || ||
Sbjct 3341537 GCATGGTAGATGGTCTCGAAGATCTGTTTGTTCAG-CTGGCGAGCCTCAGGGGACTCAAA 3341595
Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544
||||| || || | ||| | || || || ||||| || || | ||| ||||||||
Sbjct 3341596 AGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCCT 3341655
Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604
||||| | ||||| | || || |||||| || |||||| || || | ||
Sbjct 3341656 GTGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTT 3341715
Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664
||| | ||| || || ||| |||| ||| | || ||| ||| | ||
Sbjct 3341716 GTTCAAGTTGCGA------AC---AACGACCTGGGTGACCTCGTGGAGATG---CTGGAA 3341763
Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724
| | || || || | || ||| | || || |||| | ||||||||| ||
Sbjct 3341764 GTTGTAGCAGTTGTTTTCGTAGTCAACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCA 3341823
Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784
|| |||||||| || |||| |||||||| || || |||||| ||
Sbjct 3341824 GACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCG 3341883
Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844
|||||| ||||||| || || || |||||| ||| || |||||||||||||| ||
Sbjct 3341884 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 3341943
Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903
||| ||| ||||| ||| ||| | || || || ||| || | |||| || |||
Sbjct 3341944 GGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCT-TCTGAGCCTTCA 3342002
Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATAC--CCGGTATAGAGCATGTCAAACT 221960
||| | | | || ||| ||| | || ||| | ||| ||||| | | ||||
Sbjct 3342003 TGGTCTTGCGGCC-GCGGCCT---TCTCTCTCGTACTTCTCGTACAGAGCCT--CGAACT 3342056
Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020
|||||||| || | ||||| || ||| | ||| ||||| || ||||||
Sbjct 3342057 CGTCACCGTAGCATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGC 3342116
Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080
||| | | |||| || |||||||||||| || ||||| || || | ||||| || |
Sbjct 3342117 CGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGC 3342176
Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140
|| ||| ||||||| |||| ||| || | || ||| | |||||||| | ||||
Sbjct 3342177 GGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAG 3342236
Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200
||||||| |||||||| |||| || | ||| || || |||||||| |||||||| | ||
Sbjct 3342237 CGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGGT-CA 3342295
Query 222201 CCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCG 222259
| | ||| | |||||||| ||||| | || | | || || || |||
Sbjct 3342296 ACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCG 3342355
Query 222260 TTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-CAGACATGCCGATA 222316
||||| || || || | || ||| | || ||| ||| | || || |||
Sbjct 3342356 TTGGTACCGGCTATATAAGAGCCAGTGGCGC---GGATACGATGGACGTTCAGACCAATA 3342412
Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376
|| ||||| || |||||||||||||| |||||||||| || ||| ||||| ||
Sbjct 3342413 CCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTAGATACCCTCAATG 3342472
Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436
||| ||||| | || | || || || ||||||| ||||| | || | || |||
Sbjct 3342473 CTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCG 3342532
Query 222437 TTAAACAGCGTGGGACTGGCGTGTGT---AAAGTAGCCCCTAGACATCAGATCGTACGTC 222493
|| |||||||| || |||||||| ||| | | | |||||||| | ||| |||
Sbjct 3342533 TTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGC---GACATCAGGTTGTAAGTC 3342589
Query 222494 TCTACGACTCTGGCGATGT--TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGT 222551
|| | ||||| |||| | | ||||| | | || || | |||| |||||
Sbjct 3342590 TCAATCACTCTCTCGATATCATCTCCCCAGATACCAACA--GCAACACGCATGATCATGT 3342647
Query 222552 ACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGA 222607
||| |||| || || ||| || | ||||| ||| ||||| || ||||
Sbjct 3342648 GCTGTGGCCGTTCGAC--GACTTTGCCATCGAGCT--TGAGGAGGTATGACCGCTCCAAG 3342703
Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGC 222667
|||||||| || ||||| | | | | ||||||| | | | || | ||| | ||| |||
Sbjct 3342704 GTCTTGAAGCCGAAGTATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTCGAGC 3342763
Query 222668 TCCGACTTGTG 222678
|| ||||||
Sbjct 3342764 TCTTCCTTGTG 3342774
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | ||||| | | |||||| | |||||| ||| | ||
Sbjct 3341236 GTTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGG 3341295
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || ||||||||||||||| ||||| | ||| ||||| |||||||||||||
Sbjct 3341296 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCAT 3341355
Query 221236 CAGCAGACTGTTGCG 221250
|| || ||||| ||
Sbjct 3341356 CAACAAGCTGTTTCG 3341370
>seq1
Length=5395810
Score = 163 bits (180), Expect = 5e-35
Identities = 349/520 (67%), Gaps = 19/520 (4%)
Strand=Plus/Minus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868
||| ||||| | |||||| |||||| |||||||||||| ||| ||| | ||
Sbjct 863774 CCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCC-AC 863716
Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
| | | |||| ||||| ||||| |||||||| ||||| ||||| ||||||||| | ||
Sbjct 863715 CTACGCCCAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTT 863656
Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988
|| ||||||||||||| ||| || || ||||| || ||| ||| ||||||||
Sbjct 863655 CGCCTCCATCTTCTGGCTGAAGAAGCGCGGTCTGATGCCTGGCCTGACCTTCTCCAACGA 863596
Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048
||| ||| | ||||||||||| |||| || || ||||||||||| | | | ||
Sbjct 863595 GCTGATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTC---TCA 863539
Query 26049 CTTGCTCCACAAACCTTCTC----AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGG 26104
| || | |||| | | | | | |||| | | ||||||| || || || |
Sbjct 863538 CCTG----AGGAACCGCCCCAGCAAGGCGCGCGTCGAGAAGATCATCACTGATGCCGTCG 863483
Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164
|| ||||||||||| | | ||||||||| ||
Sbjct 863482 CCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCA 863423
Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACT 26222
|| |||| || ||||| |||| |||||||||| ||| || || ||| || ||
Sbjct 863422 ACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCC--CTTGGCAA 863365
Query 26223 CGCCAGACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAG 26281
|| | ||||| ||| | || ||||| |||||||| ||||| ||||| || | | |
Sbjct 863364 CGAGAAGGTCTACAAGTCCACC-AACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 863306
Query 26282 GGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
| |||||||||||||| || ||| | ||||| ||||| ||
Sbjct 863305 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 863266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928840701472320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |