Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq109 154 1e-31 >seq109 Length=4663 Score = 154 bits (170), Expect = 1e-31 Identities = 192/259 (74%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 474663 AACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACC-GCG--AGCTCATATCTTG 474719 || ||||| | ||||| |||| || || ||||| ||| | || || | ||| | | Sbjct 1780 AAGAAATTAGTGCAATGATTTTGGCAAATTTGAAAAAAAACTGCTGAAGAT--TATTTAG 1837 Query 474720 GACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTC 474779 || |||||| | | ||||||||||||||||| || |||||||||||| ||||| | | Sbjct 1838 GAGCCCAAGTAAGTAAGGCAGTAATTACTGTTCCTGCTTATTTTAATGATGCTCAAAGAC 1897 Query 474780 AAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAAC 474839 | || || |||||||| || | ||||||||| | |||||| |||||||||||| |||| Sbjct 1898 AGGCTACCAAAGATGCAGGTAAAATTGCAGGCTTAAATGTTGAACGTATTATTAACGAAC 1957 Query 474840 CAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTT 474899 |||| ||||| || ||| |||||||| ||| | || |||||||||| | ||| Sbjct 1958 CAACTGCAGCTGCTCTTTCTTATGGTGTTG---ACAAAGGTGACAAAGAACAGACCATTT 2014 Query 474900 TAATCTTTGATTGTGGAGG 474918 || | ||||| | ||||| Sbjct 2015 TAGTGTTTGACTTAGGAGG 2033 Score = 140 bits (154), Expect = 2e-27 Identities = 262/382 (69%), Gaps = 20/382 (5%) Strand=Plus/Plus Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 ||| | ||| | ||||| ||||||| ||||| |||||||||| | |||| || ||| Sbjct 2515 AATAAGAGTATTAATCCCGATGAAGTAGTTGCTATTGGAGCTGCTATTCAAGGAGGAATT 2574 Query 475841 TTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 ||||||| ||||| ||| ||||| ||||| | || |||||||||||| Sbjct 2575 CTATCAGG------AGACGTTAAAG------ATATTTTACTTTTAGATGTAACTCCACTT 2622 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCT 475960 || ||||| ||||||| | || | | ||||| | ||||| ||||||||| || Sbjct 2623 TCTTTAGGAATTGAAACTTTAGGTAATGTCTTTACTAAATTAATTGAAAGAAATACTACT 2682 Query 475961 ATCCCATG--CAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018 || ||| | ||||| ||| || ||||| ||| | || |||||| || | ||| Sbjct 2683 ATTCCAACATCTAAAAAACAA--GTCTTTTCAACTGCCGCAGACAATCAACCAGCAGTAG 2740 Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT--GGAAC 476076 || || | || |||| ||| | || | |||||||| ||||| |||| Sbjct 2741 ATATTCATGTTTTACAAGGAGAACGTCCTTTAGCAGCTGATAATAA--AACTTTGGGAAG 2798 Query 476077 TTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTT 476136 || | | || |||||| || || || | ||| |||||||||||||||||||||| Sbjct 2799 ATTCCAATTAACAGATATTCCACCAGCACCTCGCGGAATTCCTCAAATTGAAGTTACTTT 2858 Query 476137 TGATATTGATGCAAATGGTATT 476158 ||| | ||||||||||| ||| Sbjct 2859 TGACCTGGATGCAAATGGAATT 2880 Score = 89.7 bits (98), Expect = 3e-12 Identities = 128/180 (71%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 290823 CAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGAC 290882 ||| |||||| | | | |||||| |||||||| || ||||| | | |||| | | Sbjct 1987 CAACACCATAAGAAAGAGCAGCTGCAGTTGGTTCGTTAATAATACGTTCAACATTTAAGC 1928 Query 290883 CTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGA 290942 |||||||||| | | |||| || ||||| | ||| |||||||||||||||||||| | Sbjct 1927 CTGCAATTTTACCTGCATCTTTGGTAGCCTGTCTTTGAGCATCATTAAAATAAGCAGGAA 1868 Query 290943 CTGTAATAACAGCTTTTTCCACTTTCTT----TTTCAAATAATTTTCTGCCATTTGTTTT 290998 | ||||| || || || |||| ||| | ||||||| ||| || ||| |||| Sbjct 1867 CAGTAATTACTGCCTT----ACTTACTTGGGCTCCTAAATAATCTTCAGCAGTTTTTTTT 1812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268164058117244