Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-38 seq7 167 3e-35 seq1 125 9e-23 seq10 111 2e-18 seq2 107 2e-17 seq5 93.3 5e-13 >seq3 Length=3828249 Score = 178 bits (196), Expect = 2e-38 Identities = 260/368 (71%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180 ||||||||||| |||||||| || || ||||| | ||| |||| |||||||||||| Sbjct 2026828 GTCGGCTGCATAGTCGACGGCTGCCCACCCGGCATGGCCCTGACCGAAGCCGACATCCAG 2026887 Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240 || ||| || | ||||| || |||||| ||| | |||| || ||||||||| Sbjct 2026888 CCCCAGATGACGAGACGCCGGCCCGGCCAGTCCGCCATCACCACCCCTCGCAACGAGAAA 2026947 Query 18241 GATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGC 18300 || ||||| ||||| || ||||| ||| |||| | ||||| ||| | || | ||| Sbjct 2026948 GACCGCGTGCAGATCCAATCCGGCACCGAGTTCGGCGTGACGCTGGGCACACCAATTGGC 2027007 Query 18301 CTCTTTGTGGCCAACCGCGACCAGCGGCC------CGTCGACTATTCCGACATGTGCAAG 18354 | | || ||| ||||||||||| | || | | || |||| || | Sbjct 2027008 ATGCTGGTCATGAACGAGGACCAGCGGCCAAAGGACTACGGCAACTCGACCATGGACATG 2027067 Query 18355 GTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCG 18414 | || || ||||| |||||||||| |||||| ||| ||||||||| ||||||| ||| Sbjct 2027068 TTCCCCCGCCCCTCGCACGCCGACTGGACCTACCTGGAGAAGTACGGCGTCAAGGCCTCG 2027127 Query 18415 TCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTC 18474 || ||||| ||| || || || |||||| || ||| || ||||||||||| || Sbjct 2027128 TCCGGCGGCGGCAGGAGCAGCGCGCGGGAGACCATCGGGCGGGTGGCCGCCGGCGCCATC 2027187 Query 18475 GCCGAGAA 18482 |||||||| Sbjct 2027188 GCCGAGAA 2027195 Score = 141 bits (156), Expect = 1e-27 Identities = 127/158 (80%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 19046 GGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGA 19105 ||||||||||||||| || || || ||||| |||| ||| | ||||| ||||| Sbjct 2027430 GGACAGCATCGGCGGGACCGTCACCTGCGTCATCAAGAACGCGCCCTCGGGCCTGGGCGA 2027489 Query 19106 GCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCAC 19165 ||||||||| |||||||| |||||| |||||| |||||||||||||| ||||| ||||| Sbjct 2027490 GCCGTGCTTCGACAAGATGGAGGCCATGCTCGCGCACGCCATGCTGTCCATCCCCGCCAC 2027549 Query 19166 CAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 |||||| |||||||| ||| ||| || |||| |||| Sbjct 2027550 CAAGGGCTTCGAGATCGGCTCCGGCTTCGGCGGCTGCG 2027587 Score = 125 bits (138), Expect = 9e-23 Identities = 269/408 (66%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||||||||||||||||| | || | || |||||||||| ||||||| Sbjct 3341850 ACTCGATGATCTCGGTGCACAGGTTGGAGCTGCG-GATGGTTCCCAGGTTCTTCTGGTTG 3341908 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| ||| ||||||| ||||||| |||| |||||||||| |||| ||| Sbjct 3341909 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCC 3341968 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340 ||| |||||| |||| | || | || || | | || ||||||| | Sbjct 3341969 TCGAGGATGGCGTACCACAGCTTCTGAGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTC 3342028 Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400 || || | | |||||||| || |||||||| | Sbjct 3342029 TCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCATTCAGCAAGGCCGGGGCAC 3342088 Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCA 1628460 ||| || || | ||| | ||||||||| || | | || ||| ||||||||| Sbjct 3342089 TCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCA 3342148 Query 1628461 CACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 |||| || || ||||||||||| |||||| ||||||||| |||||||||||| Sbjct 3342149 GGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTT 3342208 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAG 1628568 | ||||| | || | | || |||||||| |||||||||||| Sbjct 3342209 CGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAG 3342256 >seq7 Length=2986693 Score = 167 bits (184), Expect = 3e-35 Identities = 272/387 (70%), Gaps = 6/387 (2%) Strand=Plus/Minus Query 1573866 GACGGCGACATGCCCAACCTCTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGC 1573925 |||||| |||||||| || || | | | || |||||||| |||||||| || ||| Sbjct 2054747 GACGGCAACATGCCCCACGTCATCATCTCAGGCATGCCCGGCATCGGCAAGACGACCAGC 2054688 Query 1573926 ATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTC 1573985 | || || ||||| ||| |||||| || | | |||||||| || || ||| Sbjct 2054687 GTGCTCTGCCTCGCGCGACAGCTCCTGGGCGACGCATACAAGGAGGCCGTACTGGAGCTC 2054628 Query 1573986 AACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCC 1574045 ||||| ||||||||||||||| | ||||| ||||| || ||||||| | |||| Sbjct 2054627 AACGCCTCGGACGAGCGCGGCATAGACGTGGTGCGGAACCGCATCAAGGGCTTCGCCCAG 2054568 Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 |||| | || ||||| ||||| || |||||||| |||||||||||||||| ||| || Sbjct 2054567 AAGAAGGTCACGCTGCCTCCCGGGCGGCACAAGGTTGTCATCCTCGACGAGGCGGACAGC 2054508 Query 1574106 CTCACG-TCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGAC 1574164 | ||| |||| || ||||||||| || || || ||||| | || | || || || Sbjct 2054507 ATGACGAGCGGC-GCGCAGCAGGCCTTGAGGCGGACTATGGAGATCTACTCGAATACTAC 2054449 Query 1574165 GCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC-- 1574222 | || || | ||||||||| ||| | | |||||||| | || | |||||| Sbjct 2054448 TAGGTTCGCATTTGCGTGCAACCAGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGA 2054391 Query 1574223 TGCGCCATTCTGCGCTTTGTGCGCCTG 1574249 || || || ||||| | || | | ||| Sbjct 2054390 TGTGCGATCCTGCGGTATGCGAGGCTG 2054364 >seq1 Length=5395810 Score = 125 bits (138), Expect = 9e-23 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | || || || ||||||||| | ||||||||| | || || ||| | || Sbjct 3993561 CTGTTCGAGATCATTCTTGCTGCCAACTACATGGACATCAAGGCGCTTCTGGATGTCGGC 3993620 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | || ||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 3993621 TGCAAGACAGTTGCCAACATGATCAAGGGCAAGTCTCCCGAGGAGATTCGCAAGACTTTC 3993680 Query 1592288 AACATCA 1592294 ||||||| Sbjct 3993681 AACATCA 3993687 Score = 123 bits (136), Expect = 3e-22 Identities = 176/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | || ||||| Sbjct 863260 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 863319 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| || || | || Sbjct 863320 TTCTCCATGAAGTCGAAGGGGTTGGTGGACTTGTAGACCTTCTCGTTGCCAAGGGCGACG 863379 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || |||||||| || |||||||||||||| ||| ||| |||||||||||||| Sbjct 863380 AGGAGACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCGAGC 863439 Query 868871 AG-CGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || | || || || | ||| ||| ||||| ||||| || ||||||| || ||| Sbjct 863440 AGACTGCA-GGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGAT 863498 Query 868930 GATCT 868934 ||||| Sbjct 863499 GATCT 863503 Score = 107 bits (118), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||||| |||||| |||| ||||| ||||| || |||||||| Sbjct 863574 ACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCGCGCTT 863633 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| ||||||| | |||| || ||| ||||| ||||| || || || || Sbjct 863634 CTTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAA 863693 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG---TCGAGGCCCTCCTTGTTGATCCACTTCATCGC 869355 | | | || |||| ||| ||||| ||| || || |||||||||||| || Sbjct 863694 GGCAACCAGACGCTGGGCGTAGGTGGACTCGTGGTCC------GTGATCCACTTCAGGGC 863747 Query 869356 CCAGTCGGCCTTTTT 869370 |||||||||||| || Sbjct 863748 CCAGTCGGCCTTCTT 863762 >seq10 Length=1984115 Score = 111 bits (122), Expect = 2e-18 Identities = 195/280 (70%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| ||||||||||| ||| ||||| | ||||||||||| || ||||| || Sbjct 928883 AGGTCGATCTTGGAGTTGGCGTCGCTCGACGACATCTTGCCGCCCTGC---AGGCCGGGG 928827 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGC 1852159 || | ||||| | | ||| ||||| || || || || ||||| ||| Sbjct 928826 ACCATGGGGTTCATGATGTGCGCGCGCTGGCGGTACCCCAGCTTGGGCAGCCAGTCCTTG 928767 Query 1852160 GCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 1852219 || | || | ||||||||||||| ||||| ||||| |||| ||| |||||| | Sbjct 928766 GCGGCCGTGAAGAGCTTGCGCTGGTCGACGCCGCCGAACTGCACGTCCACGCCGAGGTAC 928707 Query 1852220 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTT-GCGGTC 1852278 ||||||||||| |||||| || |||||||||| | | |||| ||| ||| || || Sbjct 928706 TGCTCGTCGAGCACCTGCAGGACGGGGTAGAGCAGGCCGGACAGGGGCGCGTTGGCCGT- 928648 Query 1852279 CATCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGC 1852316 | |||||| |||| ||| |||||| || ||| ||||| Sbjct 928647 CTGCTTGACGACCTCGGCGCCGGCCTTCTTGGCGTCGTGC 928608 >seq2 Length=4895233 Score = 107 bits (118), Expect = 2e-17 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGA-CGAGGC 344240 || ||||||||||| || |||||||||||||||||||| ||||||||| || | || || Sbjct 2845747 GTCGCCTTCCCCACAGAAACCGTCTACGGCCTCGGCGCGGACGCCACG-CTCACCGCCGC 2845689 Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGT 344300 ||| | |||||| | | ||||||||| ||||| |||||||| |||| |||||||| Sbjct 2845688 CGTCAAGGGCATCTACGCCGCCAAGGGCCGGCCCTCGGACAACCCGCTCATCGTGCACGT 2845629 Query 344301 G 344301 | Sbjct 2845628 G 2845628 Score = 87.8 bits (96), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 || || ||||| ||||||||| ||||||| || | || |||||| || | | Sbjct 618134 CCCGTGGAGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCCAGCTCCGTGATCTCCATC 618193 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 |||||| | || |||| || | |||||||| ||| ||||||| | | Sbjct 618194 ACCTCGGGGGTGTAGATGCGCTCGAGGACGAGCTGGGCGACGCGG---TCGCCCTCGGCC 618250 Query 1572500 ACGTGG---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556 || ||| |||||||| | ||||||||| || | ||| |||| |||||| |||||| Sbjct 618251 ACCTGGAAGTCGGCGTCCGAGTGGTTGAACAGGAGGACCTTGACCTGGCCGCGGTAGTCG 618310 Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586 || ||||||||||| ||||| ||||||| Sbjct 618311 GCGTCGATGACGCCCGCGCCCGTGTCGATG 618340 >seq5 Length=3440085 Score = 93.3 bits (102), Expect = 5e-13 Identities = 135/186 (73%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 1726966 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 1727025 ||||| || |||||| || |||||||||||| |||||||||||||| ||||| || | Sbjct 2328596 GTCGACATCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTCGTGCGGGGCTTCTCCAA 2328537 Query 1727026 ATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCAG 1727085 ||||||||||||| | ||| || | | ||||| | | ||||||| || | | || Sbjct 2328536 GTAGGCGCGCATGATGATGCAGAGGTCAT--CCGACAACTTATCGGACAGAGACTTG-AG 2328480 Query 1727086 GC-GTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144 | ||||| | || || | | ||| || |||||||| || || || ||||||| | Sbjct 2328479 CCTGTCGG-CGTACTCAAGGGCGGTGGCGGGGTCGTGGATGGAGCAGGGGCCAACGACGA 2328421 Query 1727145 CCAGCA 1727150 | |||| Sbjct 2328420 CAAGCA 2328415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107110231166901