Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 188 1e-41 seq10 129 9e-24 seq3 129 9e-24 seq1 118 2e-20 seq2 107 3e-17 seq8 93.3 7e-13 >seq7 Length=2986693 Score = 188 bits (208), Expect = 1e-41 Identities = 357/521 (69%), Gaps = 12/521 (2%) Strand=Plus/Minus Query 2018925 GAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCCGTTGCCTAC 2018984 || ||||||||||| | |||||||||||||| ||||||| | | | | | Sbjct 2054825 GAGAAGTACCGCCCCGTCTTCCTCGACGACATCGTCGGCAACGTCGAGACGATAGAACGC 2054766 Query 2018985 CTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGC 2019044 |||||| | ||| ||||||||||||||| || || | | | ||| ||||||| Sbjct 2054765 CTCAAGATCATCGCCAAGGACGGCAACATGCCCCACGTCATCATCTCAGGCATGCCCGGC 2054706 Query 2019045 ACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGAC 2019104 | |||||||| || ||| | ||||| ||||| |||| |||||| || | | Sbjct 2054705 ATCGGCAAGACGACCAGCGTGCTCTGCCTCGCGCGACAGCTCCTGGGCGACGCATACAAG 2054646 Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 |||||||| || || ||||| || || |||||||||||| | ||||| ||||| | | Sbjct 2054645 GAGGCCGTACTGGAGCTCAACGCCTCGGACGAGCGCGGCATAGACGTGGTGCGGAACCGC 2054586 Query 2019165 ATCAAGCATCACGCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGA 2019219 |||||| |||||| | ||||| || ||||| ||||| || |||||||| Sbjct 2054585 ATCAAG-----GGCTTCGCCCAGAAGAAGGTCACGCTGCCTCCCGGGCGGCACAAGGTTG 2054531 Query 2019220 TCATCCTCGATGAGGCCGACTGCCTTACG-TCGGCGGCCCAGCAGGCCCTCCGATCGACC 2019278 |||||||||| ||||| ||| || | ||| |||| || ||||||||| | | ||| Sbjct 2054530 TCATCCTCGACGAGGCGGACAGCATGACGAGCGGC-GCGCAGCAGGCCTTGAGGCGGACT 2054472 Query 2019279 ATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTC 2019338 ||||| | ||| | || || || |||| || | || |||||| ||| | | || Sbjct 2054471 ATGGAGATCTACTCGAATACTACTAGGTTCGCATTTGCGTGCAACCAGTCCAACAAGATC 2054412 Query 2019339 ATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 ||||| | || ||| || || || ||| |||| | |||| | || || || | |||| Sbjct 2054411 ATCGAGCCGCTGCAGTCGCGATGTGCGATCCTGCGGTATGCGAGGCTGACGGATGGCCAG 2054352 Query 2019399 ATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 | | | ||| |||| || | ||||| || || ||||| Sbjct 2054351 GTGGTCAAGCGCCTGCTGCAGGTCATCGAGGCGGAGAAGGT 2054311 >seq10 Length=1984115 Score = 129 bits (142), Expect = 9e-24 Identities = 199/280 (71%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 || || ||||||||| ||| ||||| | |||||||||| ||| ||||| || Sbjct 928883 AGGTCGATCTTGGAGTTGGCGTCGCTCGACGACATCTTGCCGCCCTGC---AGGCCGGGG 928827 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | | ||| ||||| |||||| |||||| ||||| ||| Sbjct 928826 ACCATGGGGTTCATGATGTGCGCGCGCTGGCGGTACCCCAGCTTGGGCAGCCAGTCCTTG 928767 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 || | |||| ||||||||||||| ||||| ||||| |||| ||| |||||| | Sbjct 928766 GCGGCCGTGAAGAGCTTGCGCTGGTCGACGCCGCCGAACTGCACGTCCACGCCGAGGTAC 928707 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTC 2411621 ||||||||||| |||||| || ||||||| ||| | || |||| ||| || || Sbjct 928706 TGCTCGTCGAGCACCTGCAGGACGGGGTAGAGCAGGCCGGACAGGGGCGCGTTGGCCGT- 928648 Query 2411622 CATCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGC 2411659 | |||||| |||| |||| |||||| || ||| ||||| Sbjct 928647 CTGCTTGACGACCTCGGCGCCGGCCTTCTTGGCGTCGTGC 928608 >seq3 Length=3828249 Score = 129 bits (142), Expect = 9e-24 Identities = 275/412 (67%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||||||||||||||||| | || |||| |||||||||| |||||| Sbjct 3341850 ACTCGATGATCTCGGTGCACAGGTTGGAG--CTGCGGATGGTTCCCAGGTTCTTCTGGTT 3341907 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| | ||||| ||| ||||||| |||||| |||| || |||||| |||| || Sbjct 3341908 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGC 3341967 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCT-CG--CGCGGCCCTN 2071748 | || |||||| |||| | | | || || |||| | || ||||||| | Sbjct 3341968 CTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCAT---GGTCTTGCGGCCGCGGCCTTC 3342024 Query 2071749 NNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGG 2071808 | || || || || || | |||| ||| || |||||||| Sbjct 3342025 TCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCATTCAGCAAGGCCGGG 3342084 Query 2071809 CGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAG 2071868 |||| ||||| | ||| | |||||||||| || | || || ||| || || Sbjct 3342085 GCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAG 3342144 Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928 ||| |||| ||| | ||||| ||||| |||||| ||||||||| |||||||| Sbjct 3342145 GTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTT 3342204 Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 |||| || ||||| | || | || || |||||||| |||||||||||| Sbjct 3342205 CTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAG 3342256 >seq1 Length=5395810 Score = 118 bits (130), Expect = 2e-20 Identities = 182/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| | | Sbjct 863252 TGACACCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAA 863311 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | ||| ||||||| | | |||| ||||||| || Sbjct 863312 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGACTTGTAGACCTTCTCGTTGCCAA 863371 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | |||||| || || |||||||| ||||| || |||||||| ||| ||| |||||| Sbjct 863372 GGGCGACG--AGGAGACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTT 863429 Query 794069 CATGCCGATGAG-CGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 |||||||| || | || ||| || | ||| | | ||||| ||||| || |||||| Sbjct 863430 CATGCCGAGCAGACTGCA-GGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGG 863488 Query 794128 CCTCGATGATGATCT 794142 | || ||||||||| Sbjct 863489 CATCAGTGATGATCT 863503 Score = 116 bits (128), Expect = 6e-20 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | || || || ||||||||| | ||||||||| | || || ||| | || Sbjct 3993561 CTGTTCGAGATCATTCTTGCTGCCAACTACATGGACATCAAGGCGCTTCTGGATGTCGGC 3993620 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| || |||||| | |||||||||||||| |||||||| || |||||||| || Sbjct 3993621 TGCAAGACAGTTGCCAACATGATCAAGGGCAAGTCTCCCGAGGAGATTCGCAAGACTTTC 3993680 Query 2035749 AACATCA 2035755 ||||||| Sbjct 3993681 AACATCA 3993687 Score = 86.0 bits (94), Expect = 1e-10 Identities = 136/195 (70%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||||| |||||| ||| ||||| ||||| || |||||||| Sbjct 863574 ACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCGCGCTT 863633 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||||| |||| || ||| ||||| ||||| || || || || Sbjct 863634 CTTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAA 863693 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTG---TCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 | | || || |||| ||| | ||| || || || |||||||||||| || Sbjct 863694 GGCAACCAGACGCTGGGCGTAGGTGGACTCGTGGTCC------GTGATCCACTTCAGGGC 863747 Query 794517 CCACTCTGCCTTTTT 794531 ||| || ||||| || Sbjct 863748 CCAGTCGGCCTTCTT 863762 >seq2 Length=4895233 Score = 107 bits (118), Expect = 3e-17 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCG-TCAGACGAGGC 2233149 |||||||| ||||| || |||||||| ||||||||||| ||||| || ||| || || Sbjct 2845747 GTCGCCTTCCCCACAGAAACCGTCTACGGCCTCGGCGCGGACGCCACGCTCAC-CGCCGC 2845689 Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209 ||| || |||||| | |||||||||||| || || |||||||| ||||||||||||| Sbjct 2845688 CGTCAAGGGCATCTACGCCGCCAAGGGCCGGCCCTCGGACAACCCGCTCATCGTGCACGT 2845629 Query 2233210 G 2233210 | Sbjct 2845628 G 2845628 >seq8 Length=2839550 Score = 93.3 bits (102), Expect = 7e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG-GCCGG 1485604 |||||||||||| |||| | ||| ||| |||||| || ||| | || | || Sbjct 2084561 GGTCTGGATCTCTCGGGAGGAGATGGTGGACTTCTTGTT-GTAGGCGGCGAGCTTGGAGG 2084503 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| || || | ||||||||||| || ||||||| ||| ||||| | Sbjct 2084502 CCTCGGTGGCGACCCGCTCAAAGATGTCGTTGACGAAAGAGTTCAGGATAGACATGGCAC 2084443 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 2084442 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 2084403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916208849779967