Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 158 8e-34 seq5 136 3e-27 seq4 118 7e-22 >seq2 Length=4895233 Score = 158 bits (174), Expect = 8e-34 Identities = 166/216 (77%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| ||||||||||||||| ||||| ||||| || ||| |||| | || || Sbjct 4675577 ACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 4675518 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| |||||||||||||| || |||||||| | || | ||||||||||| | Sbjct 4675517 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGA 4675458 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || || ||||| || | ||||| || || ||| || |||| ||| ||||| Sbjct 4675457 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGT 4675402 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||| |||||||||||||| || |||||||||||||| Sbjct 4675401 CTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 4675366 >seq5 Length=3440085 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 3137810 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3137751 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| || |||||||| | || | ||||||||||| Sbjct 3137750 TCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC 3137691 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||| || || | ||| |||||| Sbjct 3137690 TGAATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 3137631 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| || |||||||||||| Sbjct 3137630 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 3137598 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| | || || || ||||||||||| || Sbjct 3138018 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 3137959 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || ||||||||| | || | ||||||||||| | || || |||||| Sbjct 3137958 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 3137899 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || || |||||| |||| || |||||||| || ||||||||||| || Sbjct 3137898 GTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 3137839 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 3137838 GAAGATTTGCAT 3137827 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 3138266 AGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCATCT 3138207 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| |||||||| || || ||||||||| | || | ||||||||||| Sbjct 3138206 TCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 3138147 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || || ||| || || | ||||| ||| Sbjct 3138146 TGAATCTTGCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTTATCGTC 3138087 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| | ||||| || ||||||||||| Sbjct 3138086 TTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 >seq4 Length=3484069 Score = 118 bits (130), Expect = 7e-22 Identities = 139/186 (75%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| |||| || || ||||| |||||||||| Sbjct 949907 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 949848 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | || || ||||| || Sbjct 949847 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 949791 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| |||| ||| |||||||| ||||| |||||||| Sbjct 949790 -TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 949732 Query 34964 ACAAAG 34969 || ||| Sbjct 949731 ACGAAG 949726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691398808507