Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 246 3e-60 seq5 127 2e-24 seq1 127 2e-24 seq2 125 7e-24 seq4 114 1e-20 >seq3 Length=3828249 Score = 246 bits (272), Expect = 3e-60 Identities = 994/1541 (65%), Gaps = 41/1541 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| |||||||| || ||||| || ||| | || | ||| || | || Sbjct 3341237 TTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGC 3341296 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || ||||||||||||||| |||||||| || | ||| || |||||| || | | Sbjct 3341297 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATC 3341356 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTAT-TTTGCGCTTCAGAGCCGCCCAGTCCCA 148438 | || ||| || | |||| | | || || ||||| ||||| ||| |||||||||| Sbjct 3341357 AACAAGCTGTTTCGGATACCGTGCTCCTTGATCTTTGC-CTTCAAAGCATCCCAGTCCCA 3341415 Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGC 148497 ||| || || ||| ||||||||| || || || || | | || || |||| Sbjct 3341416 GAGATCAGAAGGCTGGACGCCCCACATGTCATATTGAAG-CTGTCCCTGCGAGACGGGAG 3341474 Query 148498 TGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCG 148557 |||||||| | ||| || |||| || || | ||||| ||| | | Sbjct 3341475 ATCCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAG 3341534 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGT 148617 | | | ||| || |||||| || || |||| ||| | ||| | || Sbjct 3341535 CAGCATGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAGGGGACTCAA 3341594 Query 148618 ACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCC 148677 | ||||| || || || || || || ||||| ||||| || || || |||||||||| Sbjct 3341595 AAGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCC 3341654 Query 148678 GGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCT 148737 |||| |||||| | | || || | || ||||||||| || ||||||| Sbjct 3341655 TGTGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCT 3341714 Query 148738 TG-TCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGT---AC 148793 || ||||| ||||| || || |||| || | | | || | || | || | Sbjct 3341715 TGTTCAAG-TTGCGAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAG 3341773 Query 148794 TTGTCATC-TACGATGCATCGGTT--CACGGCGATAGAGGCTAGATTGCACACGGCCGTC 148850 |||| || || ||| | | || || || ||||| || ||||| || ||| | Sbjct 3341774 TTGTTTTCGTAGTCAACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCACC 3341833 Query 148851 TCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCC 148910 ||||| || || | |||||| | |||||||| |||||| ||| || ||| ||| Sbjct 3341834 TCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTCCC 3341893 Query 148911 ACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCA 148970 | |||||| || |||||||||| |||||| || |||||||| |||||| | || ||| Sbjct 3341894 AGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCG 3341953 Query 148971 GTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCA----CTTG 149023 || || ||| | || | || | ||| ||| | ||| || || |||| Sbjct 3341954 GTCTCGGTCTGGGCCTCGAGGATGGCGTACC---ACAGCTTCTGAGCCTTCATGGTCTTG 3342010 Query 149024 CTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCG 149081 | || ||| || || |||||| | ||| | ||| ||||||| | || ||| Sbjct 3342011 CGGC----CGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGC--CTCGAACTCGTCACCG 3342064 Query 149082 TAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCG 149141 ||||| || | || |||||||||| || ||||||||||| | ||| |||||| | Sbjct 3342065 TAGCATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTC 3342124 Query 149142 TACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTG 149201 | || |||||||| || || || || | |||||| || | ||||||||| ||| | Sbjct 3342125 TCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGG 3342184 Query 149202 CAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCAC 149261 || || || ||| |||| | ||| | || | || |||||||| Sbjct 3342185 ACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCAT 3342244 Query 149262 GGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGC 149318 ||||| | ||| | |||| || || |||||| || |||||||| |||| || Sbjct 3342245 GGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGGTCAACGTAACGG 3342304 Query 149319 ACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTA-GA 149377 | ||||||| || || |||| ||| || || ||| | | |||||||| ||| Sbjct 3342305 GCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTACCG 3342364 Query 149378 GCTA-ATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGT 149436 |||| || || ||| || || | || ||||| | || || || ||| | Sbjct 3342365 GCTATATAAGA--GCCAGTGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGCCA 3342422 Query 149437 ACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGC 149495 ||| ||||| ||||| ||| ||| || |||||| ||||| |||||||| | Sbjct 3342423 TCTTGGAGATCATGGCGCATGTC-TTGAGAGTATCGTAGATACCCTCAATGCTGTCATCC 3342481 Query 149496 TTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATG 149555 |||||| | || ||||| || ||| || || | || || || ||||| Sbjct 3342482 TTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGC 3342541 Query 149556 GTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGG 149615 || || |||||||| ||| |||| || ||||| | ||| | ||| | ||| | Sbjct 3342542 GTAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCACTCTC 3342601 Query 149616 TCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCC 149675 || || ||||| || ||| || | || || ||||| | ||| ||||| || || || Sbjct 3342602 TCGATATCATCTCCCCAGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCG 3342661 Query 149676 GCCACTTTGTTTCCAATTTTGAGCAAGTA-GCCGTTTTCTAGTGTCTTGTAGCCAAAGTA 149734 | |||||| | | ||||| | ||| | | | | || |||||| |||| ||||| Sbjct 3342662 ACGACTTTGCCATCGAGCTTGAGGAGGTATGACCGCTCCAAG-GTCTTGAAGCCGAAGTA 3342720 Query 149735 CTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 | |||| | ||||| ||| | | ||||||| | ||||| Sbjct 3342721 TTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTCGA 3342761 >seq5 Length=3440085 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| |||||| ||||||||||| Sbjct 3137796 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCC 3137737 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| |||||||| || |||||||| ||||| ||| Sbjct 3137736 AGCGAAGATCAAACGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGACTT 3137677 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | |||||| |||| ||||| ||| ||||| || || || Sbjct 3137676 GACGTTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 3137617 Query 133643 TTTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 3137616 CTTCACGAAGATCTGCATGG 3137597 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 3138023 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 3137964 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 3137963 GCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 3137904 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| || ||| || || | |||| ||| |||||||| || || Sbjct 3137903 ACGTTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTC 3137844 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 3137843 TTGACGAAGATTTGCAT 3137827 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| || || ||| | | | || || | Sbjct 3138260 AAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCA-TCTTCCAA 3138202 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| || ||||| || |||||||| || Sbjct 3138201 CTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAAT 3138142 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||||| | || |||||| || | || | || || || Sbjct 3138141 CTTGCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTTATCGTCTTTCC 3138082 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 3138081 CGTCAATGTCTTGACGAAGATCTGCAT 3138055 >seq1 Length=5395810 Score = 127 bits (140), Expect = 2e-24 Identities = 352/527 (67%), Gaps = 31/527 (6%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || ||||| || ||||| || ||||| || ||||| | | || ||||| | Sbjct 863265 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 863324 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | | || || ||| | ||| | ||||| || Sbjct 863325 CATGAAGTCGAAGGGGTTGGTGGACTTGTAGACCTTCTCGTTGCCAAGGGCGACGAGGAG 863384 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCA-ACG 120529 ||||| || || ||||| ||||||| ||| | ||||||||||| |||| || Sbjct 863385 ACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACT 863444 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 || || | ||| || | ||||||||||||||| | || || || ||| || Sbjct 863445 GCAG-GGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGA---TG- 863499 Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTC----GGT---AGTACAG- 120641 || | | | || || |||| | ||| |||| ||| || |||| Sbjct 863500 -----ATCTTCTCGACGCGCGCCTTGCT---GGGGCG-GTTCCTCAGGTGAGAGAACAGC 863550 Query 120642 --GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||| || ||||| |||||||| |||||||| || || |||||||||||| || ||| Sbjct 863551 AGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTC 863610 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGC-AAAGCTGCCCGAAAA 120758 ||||| ||||| | || | |||| | |||| |||| ||| ||||| || || Sbjct 863611 AGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGC-ACCGCTGAA 863669 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-- 120816 ||| | ||||| || || ||||| |||| |||| ||| | || | | || || Sbjct 863670 GAAGATACCCTCAACAGCAGCGAAGGCAACCAGACGCTGGGCGTAGGTGGAC-TCGTGGT 863728 Query 120817 CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | || ||||||||||| |||||| |||||||| || || | ||| || Sbjct 863729 CCGT-GATCCACTTCAGGGCCCAGTCGGCCTTCTTACGGATGCAGGG 863774 >seq2 Length=4895233 Score = 125 bits (138), Expect = 7e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||| ||||| || ||||| ||| | ||| |||||||||||||||||| Sbjct 4675566 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 4675507 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 4675506 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTT 4675447 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || |||||| || | ||||| ||| || || || || || Sbjct 4675446 GACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGT 4675387 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4675386 CTTGACGAAGATCTGCATG 4675368 >seq4 Length=3484069 Score = 114 bits (126), Expect = 1e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| | | | ||||||||||||||||| ||| | || Sbjct 949905 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCGAGCTGCTTGCCGGCGAAGAT 949847 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || |||||||| |||||||| |||||| ||||| | || Sbjct 949846 CAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTC 949787 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||||| || ||| || || | ||||| ||| ||||| ||||| || || ||||| Sbjct 949786 GATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 949727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418666905720