Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 194 2e-43 seq3 134 2e-25 seq1 122 1e-21 >seq7 Length=2986693 Score = 194 bits (214), Expect = 2e-43 Identities = 329/474 (69%), Gaps = 2/474 (0%) Strand=Plus/Plus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 ||| | || || || | | || | |||||||| ||||| || |||||| | ||||||| Sbjct 2054353 TGGCCATCCGTCAGCCTCGCATACCGCAGGATCGCACATCGCGACTGCAGCGGCTCGATG 2054412 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | ||| |||||| || | || |||| || ||||| | | | ||||| Sbjct 2054413 ATCTTGTTGGACTGGTTGCACGCAAATGCGAACCTAGTAGTATTCGAGTAGATCTCCATA 2054472 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGG-CGTGAGGCAGTCGGCCTCGTCGAGGATGAT 333030 ||| || | |||||| || || |||| ||| | || ||| |||||||||||||||| Sbjct 2054473 GTCCGCCTCAAGGCCTGCTGCGC-GCCGCTCGTCATGCTGTCCGCCTCGTCGAGGATGAC 2054531 Query 333031 GATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTT 333090 | |||||| |||||| | ||||| ||| | ||| |||| | |||||| || Sbjct 2054532 AACCTTGTGCCGCCCGGGAGGCAGCGTGACCTTCTTCTGGGCGAAGCCCTTGATGCGGTT 2054591 Query 333091 GCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGC 333150 ||||| ||||| | ||||||||||||||| |||||||| || || |||||||| | | Sbjct 2054592 CCGCACCACGTCTATGCCGCGCTCGTCCGAGGCGTTGAGCTCCAGTACGGCCTCCTTGTA 2054651 Query 333151 GGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGG 333210 || | |||| ||| ||||| ||||| | ||| || |||||||| ||||||| Sbjct 2054652 TGCGTCGCCCAGGAGCTGTCGCGCGAGGCAGAGCACGCTGGTCGTCTTGCCGATGCCGGG 2054711 Query 333211 CGGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGC 333270 | || | | | || || ||||||||||||||| ||| | ||||||| | Sbjct 2054712 CATGCCTGAGATGATGACGTGGGGCATGTTGCCGTCCTTGGCGATGATCTTGAGGCGTTC 2054771 Query 333271 AACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTC 333324 | | | |||||||||| ||||||||||| | | ||||||||||| || Sbjct 2054772 TATCGTCTCGACGTTGCCGACGATGTCGTCGAGGAAGACGGGGCGGTACTTCTC 2054825 >seq3 Length=3828249 Score = 134 bits (148), Expect = 2e-25 Identities = 334/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | |||||| | ||||| | | ||||||||| |||||| ||||| Sbjct 3342774 CACAAGGAAGAGCTCGACTCGGCCATTGTATATGACCGAGACTTCGGCTACCAATACTTC 3342715 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGAT---ATTGTCGTCGAG 259798 || | ||||||| ||||| ||||| ||| || |||| | |||||||| Sbjct 3342714 GGCTTCAAGACCTTGGAGCGGTCATACCTCCTCAA---GCTCGATGGCAAAGTCGTCGAA 3342658 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 ||||| ||| | ||| |||||||||| || |||| | |||| | || |||| Sbjct 3342657 CGGCCACAGCACATGATCATGCGTGTTGCTGTTGGTA--TCTGGGGA-GATGATATCGAG 3342601 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918 | | | | ||| || | |||| |||||||| | || ||||| Sbjct 3342600 AGAGTGATTGAGA-----CTTACAACCTG-------ATGTCGCACAAATTTTTCACACAC 3342553 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || |||| ||||| || || || || || || | || ||| ||||| ||||| || Sbjct 3342552 GCATCGCCTACGCTGTTCAACGCTGGTACACCCCAGCCTCAGCTGTCGTCATGCTTCCTC 3342493 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || || ||||| ||||| || || |||||| ||||| | Sbjct 3342492 GTCGACATGAAGGATGACAGCATTGAGGGTATCTACGATACTCTCAAGACATGCGCCATG 3342433 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| |||||| || || ||| | || || | |||||| | ||| | Sbjct 3342432 ATCTCCAAGATGGCCGGAGGTATTGGTCTGAACGTCCATCGTATCCGCGCCACTGGCTCT 3342373 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 || | || || ||||||||| ||| || || | | ||||||||||| || || ||| Sbjct 3342372 TATATAGCCGGTACCAACGGCACGTCAAATGGTATCATTCCCATGCTTCGTGTCTTCAAC 3342313 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || || ||||| |||||| Sbjct 3342312 AACACTGCCCGTTACGTTGACCAG 3342289 Score = 114 bits (126), Expect = 2e-19 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| ||| |||||| | ||||||||||| |||| |||| |||||||||| Sbjct 3341985 TGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGAT 3341926 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 ||| ||||| | ||||||||| |||||||||| |||| | ||| |||||||||| Sbjct 3341925 GCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAG-CTCCAACCTGTG 3341867 Query 262216 CACCGAGATCGTCCAGT 262232 |||||||||| || ||| Sbjct 3341866 CACCGAGATCATCGAGT 3341850 >seq1 Length=5395810 Score = 122 bits (134), Expect = 1e-21 Identities = 233/336 (69%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| || ||| |||||| ||||| ||||| ||||||||| | || | Sbjct 864172 GATATGGCAAATGTAC-AAGAAGCACGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATC 864114 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | || | | ||||| ||| ||| || ||||| | |||||| Sbjct 864113 TCTCCAAGGATCTGCACGACTGGAGCAACCGCCTGAATGATGACGAAAAGTACTTCATCT 864054 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 | |||| ||||| || ||| || |||||| || || ||||||||||| || Sbjct 864053 CTACCATCCTTGCCTTCTT-CGCTGCTTCCGATGGTATTGTCAACGAGAACCTGGTCGAG 863995 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| ||| | || ||||| |||| || ||||| ||||||||| Sbjct 863994 CGTTTCAGCGCCGAGGTTCAAATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATG 863935 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || || ||||| || || |||||||| ||| ||||||| || Sbjct 863934 ATGGAGAACATTCACTCCGAGACATACTCCCTGCTCATCGACACATACATCAAGGAGCCT 863875 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106 | | || | ||| |||| || ||||| ||||| Sbjct 863874 GCCCAG-CGCACCTACCTTTTCAATGCCATTGACAC 863840 Score = 104 bits (114), Expect = 3e-16 Identities = 183/259 (71%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| || ||||||| || ||||| ||||| | | ||| | || || Sbjct 863506 AGAAGATCATCACTGATGCCGTCGCCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCC- 863448 Query 1456578 TGGCG-CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCG 1456636 || | || ||||||||||||||| | || ||| |||||||| || || || |||| Sbjct 863447 TGCAGTCTGCTCGGCATGAACGCCAAC-CTGATGAAGCAGTACATCGAGTTC-GTGGCCG 863390 Query 1456637 ACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCA 1456696 |||| || |||| || || ||| || ||||| |||| | | ||||||| ||| Sbjct 863389 ACCGTCTCCTCGTCGCCCTTGGCAACG-AGAAGGTCTACAAGTCCACCAACCCCTTCGAC 863331 Query 1456697 TGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAG 1456755 | |||||| ||||| || | |||||||||||||| |||||| || || || || Sbjct 863330 TTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGAC 863271 Query 1456756 TACGCCAAGGCCGGCGTCA 1456774 ||| |||||||| |||| Sbjct 863270 TACCAGAAGGCCGGTGTCA 863252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177777152501186