Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 293 3e-74 seq15 95.1 2e-14 seq1 87.8 2e-12 >seq3 Length=3828249 Score = 293 bits (324), Expect = 3e-74 Identities = 1018/1577 (65%), Gaps = 35/1577 (2%) Strand=Plus/Plus Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAG 110610 ||||||||| | ||||| | ||| |||||||| ||||| | | | || | Sbjct 3341119 CTTGATATCGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACG 3341178 Query 110611 ATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTT 110670 | ||||||| ||| ||||| |||||||||| | ||||| ||| || ||| Sbjct 3341179 GTTCTTCATAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTT 3341238 Query 110671 GACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTC 110730 ||| | ||||| || || || | || | |||||||||| | |||||||| || Sbjct 3341239 GACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTC 3341298 Query 110731 AAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAA 110790 ||||| || || || |||| || || | ||||| || || ||||| ||||||||||| Sbjct 3341299 GAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAA 3341358 Query 110791 AAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTT 110850 | ||||| || | ||| | ||||||||| | |||| | | |||||||||| || Sbjct 3341359 CAAGCTGTTTCGGATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGA- 3341417 Query 110851 GAGCTT--GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAA 110908 || | || | || ||||||||||| | |||||| || || || ||||||| Sbjct 3341418 GATCAGAAGGCTGGACGC-CCCACATGTCATATTGAAGCTGTCCCTGCGAGACGGGAGAT 3341476 Query 110909 CCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGAT 110968 ||||| | || | || | || | | | || | || || ||| || | Sbjct 3341477 CCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCA 3341536 Query 110969 GCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAAT 111028 || || || ||||| || ||||| | |||| || || ||| || ||||| Sbjct 3341537 GCATGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAGGGGACTCAAAA 3341596 Query 111029 GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTG 111088 | |||| | || |||| || ||||| || ||||| | |||||| || ||| Sbjct 3341597 GGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCCTG 3341656 Query 111089 TGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA-CTCG 111147 |||||||| || || || || ||||| || || ||||||| || | Sbjct 3341657 TGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTTG 3341716 Query 111148 GTTTAGATTTTTGGTAACAAT---CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGT 111204 | || ||| ||||| || |||| || || || | | | | | Sbjct 3341717 TTCAAG----TTGCGAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTA--- 3341769 Query 111205 GCGAGTCTCTTCATTG---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGC 111261 || | | ||| | | ||||| ||| || || || || |||| ||||| ||||| Sbjct 3341770 GCAGTTGTTTTCGTAGTCAACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGC 3341829 Query 111262 CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGT 111321 | |||||| | | |||||| | || || || || | |||||| || || || Sbjct 3341830 CACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGT 3341889 Query 111322 CCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 111381 |||| ||||| ||||| ||||| |||||| |||||||||||||||||| |||| | Sbjct 3341890 TCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTT 3341949 Query 111382 CCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG 111440 || ||||| ||||| | | ||| || || | ||| | | || | | || |||| Sbjct 3341950 GCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTC----ATGG 3342005 Query 111441 CGTTG--GCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 111497 ||| ||| || || || ||||||||| ||| || || || ||||| ||||| Sbjct 3342006 TCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGT 3342065 Query 111498 CCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCT 111557 || | || || || || || || || | || | ||| | || | || Sbjct 3342066 AGCATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCT 3342125 Query 111558 CAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAG 111617 |||||||||||||||| ||||| |||||||| |||| ||||| || | ||| Sbjct 3342126 CAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGA 3342185 Query 111618 CCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 |||| || | ||| ||||| ||| || || |||||||| | || ||| |||||||||| Sbjct 3342186 CCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATG 3342245 Query 111678 GCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGC 111731 |||| || |||| |||| || || ||||| ||| | || | || || | Sbjct 3342246 GCTCCAGGTAGATAGCGAAAGCACC---AGGACGCTTGTTACCACCCTGGTCAACGTAAC 3342302 Query 111732 GCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCC 111791 | || ||| ||| || || |||||||| ||||| ||||||| ||| || || || | Sbjct 3342303 GGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTAC 3342362 Query 111792 CCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCC 111851 | ||| ||| | |||| | | | ||||| || || |||||||| || ||| Sbjct 3342363 CGGCTATATAAGAGCCAGTGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGCCA 3342422 Query 111852 ACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCT 111911 ||| ||||| || || | | ||||| | |||||||| | || ||| |||| Sbjct 3342423 TCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCT 3342482 Query 111912 TGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGG 111971 | || ||| |||||||| |||| ||| || ||||||||||| ||||| || | Sbjct 3342483 TCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCG 3342542 Query 111972 TTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 112031 | || | |||||| |||| | || |||||| || ||| ||||| | || | Sbjct 3342543 TAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCACTCTCT 3342602 Query 112032 CAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCA 112091 | || || || || ||| || | || || ||||||| ||||| |||||| ||| | Sbjct 3342603 CGATATCATCTCCCCAGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCGA 3342662 Query 112092 TGAGGATGCCATCGAGC 112108 || ||||||||||| Sbjct 3342663 CGACTTTGCCATCGAGC 3342679 >seq15 Length=682953 Score = 95.1 bits (104), Expect = 2e-14 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || ||||||||| ||||| | ||| || | ||| | ||||| || | || |||||| Sbjct 481088 TCGTTACCACCCGCAAGACGAGAACCGAAGTTACCGCTGGGCTCCAGGACATTTATGTTG 481029 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACTTCACC 181924 || || ||| | ||| | |||||| || ||| || | | |||| | | |||||||| Sbjct 481028 TTCGAGCCTACAAAGTTTTGGGCCAAGCCAATGATCGTTTGCTGCAAAG-AGACTTCACC 480970 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 |||||||||||||| || |||| | || | ||||||| | |||||| | || | Sbjct 480969 GTGGTGGTAAGCTGTCTGTTCCGAGATGTAACCGGCCAACTCAACGACCTTCTTGTCTTT 480910 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 | | ||| | |||||| || || || ||||||||||| || || ||||| || Sbjct 480909 GGTCAAGTTACGCTTGAAGCAGGCGTAAATGACTTTCCTCTGACCTGGTTTCAGACCGTC 480850 Query 182045 C 182045 | Sbjct 480849 C 480849 >seq1 Length=5395810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 291/453 (64%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 863269 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 863328 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | | || | | | | || |||| ||||| Sbjct 863329 AAGTCGAAGGGGTTGGTGGACTTGTAGACCTTCTCGTTG-----CCAAGGGCGACGAGGA 863383 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 |||| || | ||| |||| ||||||| |||| | | |||||| |||| || Sbjct 863384 GACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGAC 863443 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 | || || || || || | |||| | |||||||| | || || || | | ||| Sbjct 863444 TGCAGGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGATGATCT 863503 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | || | | |||| | || | || ||| ||| ||| || | Sbjct 863504 TCTCGACGCGCGCCTTGCTGGGGCGGTTCCTCAGGTGAGAGAACAGCAGGCAGGCGAAGT 863563 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| |||||||| || || || || || || || |||||| || || ||||| | Sbjct 863564 CGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCA 863623 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||||| ||| | || | | ||| | ||| ||||||||||||||| | Sbjct 863624 GACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAA 863683 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 || || || |||| || || | |||| ||| Sbjct 863684 CAGCAGCGAAGGCAACCAGACGCTGGGCGTAGG 863716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029228808800