Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 322 6e-83 seq1 120 4e-22 >seq3 Length=3828249 Score = 322 bits (356), Expect = 6e-83 Identities = 1172/1822 (64%), Gaps = 23/1822 (1%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||||||||| ||| |||| | |||||||||||||| || || ||||| | Sbjct 3340899 TGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATGCCAGTTTTGAGAC 3340958 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTC-CATG 117923 || |||||||| | | ||||| | | |||| | || || || | |||| Sbjct 3340959 CCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTGGG-CTCACGCATG 3341017 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||| | | || || || ||||||||| || || || || | ||| | | Sbjct 3341018 TGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCAGACATCTG---C 3341074 Query 117984 ACATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 ||| | || ||| | | |||||| || ||| |||| | ||| ||||| | ||| Sbjct 3341075 ACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATATCGGCCGGG 3341134 Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 118100 || ||| || ||||| || ||| | | | || | | ||||||| ||| Sbjct 3341135 ATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTCATAGCCTCA 3341194 Query 118101 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCA 118160 ||||| |||||||||| | | || ||| | || ||||| || ||||| Sbjct 3341195 GACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACCTGGAACTCG 3341254 Query 118161 CCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 118220 || || || |||| | | ||||| || | ||||||||||| |||||||| ||||| Sbjct 3341255 CCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCACTCGTTGTTG 3341314 Query 118221 CCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGA 118280 |||| || || | |||||| || || |||||||||||||| | | |||||| |||| | Sbjct 3341315 CCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTGTTTCGGATA 3341374 Query 118281 CCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTT-GTCTCCCC 118339 || | ||| | || | |||| | ||| |||||||| || || | | || | Sbjct 3341375 CCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGA-GATCAGAAGGCTGGAC 3341433 Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 |||||| ||| | || || || || || | || |||||||| |||||| || Sbjct 3341434 GCCCCACATGTCATATTGAAGCTGTCCCTGCGAGACGGGAGATCCCTCGTATGTCTGGTA 3341493 Query 118400 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTC 118459 |||||| ||||||| || | ||| | ||| | || || || || || || || Sbjct 3341494 TGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCAGCATGGTAGATGGTCTC 3341553 Query 118460 AAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAA 118518 || || | |||| || | | |||| ||| ||||| | | ||| | Sbjct 3341554 GAAGATCTGTTTGTTCAGCTGGCGAG-CCTCAGGGGACTCAAAAGGCATGCGGAGAGCCA 3341612 Query 118519 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578 || |||| || ||||| |||||||| | ||||| || | |||| ||| || | Sbjct 3341613 AGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGCCTGTGTCGCATGTTGCTGT 3341672 Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638 | || || |||||| || || ||| || | | | || | || | Sbjct 3341673 TGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAA 3341732 Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 118698 | |||| |||| || || || | | | | | | | | | || | | |||| Sbjct 3341733 CGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAGTTGTTTTCGTAGTCAACAT 3341792 Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758 | || || || || || ||||| || || |||| |||||| | || ||||| Sbjct 3341793 ATGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACT 3341852 Query 118759 CTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACT 118818 | || || || ||||||| ||| || || ||||| |||| |||||| || || || Sbjct 3341853 CGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCT 3341912 Query 118819 TTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGA 118878 | ||| || ||||||||||| |||||| | || | || ||||| || |||| || || Sbjct 3341913 TGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGA 3341972 Query 118879 GAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCG 118937 | || || | ||| | | || | ||| || || | | | || || ||| |||| Sbjct 3341973 GGATGGCGTACCACAGCTTCTG-AGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTCTCG 3342031 Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 ||||| ||| || || || ||||| ||||| | || | || || || || Sbjct 3342032 TACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCATTCAGCAAGGCCGGGGCACTCG 3342091 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| | ||| | ||| | || || |||||||||||||||||||||||| || Sbjct 3342092 TTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGA 3342151 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 |||||||| || |||||| || || || | || || | || || || ||| Sbjct 3342152 ATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGC 3342211 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 || || | || || | || ||| |||||||| || |||||||| | |||| | || Sbjct 3342212 AAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACC- 3342270 Query 119178 TTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGC 119231 | |||| |||| |||||| || || | |||||| ||| || ||||||||| Sbjct 3342271 --AGGACGCTTGTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGC 3342328 Query 119232 ATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTG 119291 || ||||||||||||| || ||| || || || ||| ||| | |||| | | Sbjct 3342329 ATGGGAATGATACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAGTGGCGCGG 3342388 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | | |||| || || ||||||||| || ||| ||| ||||| ||||| | || Sbjct 3342389 ATACGATGGACGTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTG 3342448 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 ||| | ||||||| || || || |||| |||| | ||| ||||||||| |||| Sbjct 3342449 AGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGAC 3342508 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | |||||| |||||||||||||||||| || || || | ||||| |||| | Sbjct 3342509 AGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTG 3342568 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 || |||||| || ||| ||||| | || || || || || ||||| | Sbjct 3342569 TGCGACATCAGGTTGTAAGTCTCAATCACTCTCTCGATATCATCTCCCCAGATACCAACA 3342628 Query 119532 GAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGG 119591 | || ||||| | ||||| || || ||| | | | ||||||||| | ||||| Sbjct 3342629 GCAACACGCATGATCATGTGCTGTGGCCGTTCGACGACTTTGCCATCGAGCTTGAGGAGG 3342688 Query 119592 TAACTCTTCTCCAAGGTCTTGA 119613 || | |||||||||||||| Sbjct 3342689 TATGACCGCTCCAAGGTCTTGA 3342710 >seq1 Length=5395810 Score = 120 bits (132), Expect = 4e-22 Identities = 292/440 (66%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 863269 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 863328 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | || || | | | || | |||| ||||||||| Sbjct 863329 AAGTCGAAGGGGTTGGTGGACTTGTAGACCTTCTCGTTG-CCAAGGGCGACGAGGAGACG 863387 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||| ||||||| |||| | || |||||| |||| || | || Sbjct 863388 GTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACTGCA 863447 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||||||||||| | || || || | ||| | Sbjct 863448 GGGAAGAGCCTCAGTCAGGAACTCCTTCTCAATGGCGACGGCATCAGTGATGATCTTCTC 863507 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTG 130026 | | | || ||| || | || | || ||| || ||| || || Sbjct 863508 GACGCGCGCCTTGCTGGGGCGGTTCCTCAGGTGAGAGAACAGCAGGCAGGCGAAGTCGGT 863567 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||||||||| ||||| || || || |||||| ||| || ||||| ||||| Sbjct 863568 GTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGACC 863627 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| || | || | || ||||||||| ||||| ||| Sbjct 863628 GCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGC 863687 Query 130147 CGCGAACGCAAAGAGACGCT 130166 ||||| |||| ||||||| Sbjct 863688 AGCGAAGGCAACCAGACGCT 863707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432471154680