Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 161 3e-34 seq109 158 4e-33 seq5 111 5e-19 >seq3 Length=3828249 Score = 161 bits (178), Expect = 3e-34 Identities = 887/1407 (63%), Gaps = 20/1407 (1%) Strand=Plus/Minus Query 349268 ATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAG 349327 || || || || || |||||| | ||||| || || | ||| || || ||||| || ||| Sbjct 2924170 ATCGCCAACGACCAGGGTAACCGCACAACACCCTCTTTCGTCGCTTTCACCGACACCGAG 2924111 Query 349328 CGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTT 349387 ||| |||| || ||| | || || || || | ||| || || | || || || || Sbjct 2924110 CGTTTGATCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCCCACAACACCGTCTTC 2924051 Query 349388 GATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CAATCTGATCT 349443 || || ||||| | |||||| | |||||| || ||| ||| || | || | Sbjct 2924050 GACGCGAAGCGGTTGATTGGTCGCAAGTTTGTC-GAC---TCTGAGGTTCAGGCCGACAT 2923995 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || || || || | ||||| | | ||| | || ||| || | |||||||| || Sbjct 2923994 GAAGCACTTCCCCTTCAAGGTTGT-CGACAAGGC--TGGTAAGCCTGTCATTGAGGTCGA 2923938 Query 349504 ATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || || || | | || ||||| || || || || ||||| | | Sbjct 2923937 GTTCAAGGGCGAGACCAAGA-ACTTCACCCCCGAGGAGATCTCCTCTATGGTCCTGACCA 2923879 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | ||||| ||||| | |||| || || | | ||||| | || | Sbjct 2923878 AGATGCGTGAGACCGCTGAGGCATACCTGGGTGGCACCGTTAACAACGCTGTCGTCACCG 2923819 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || || || || |||||| | Sbjct 2923818 TTCCTGCCTACTTCAACGACTCTCAGCGTCAAGCCACCAAGGACGCCGGTCTCATTGCTG 2923759 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || ||||| | || || || || || || ||||| || || || || || || | Sbjct 2923758 GCCTGAACGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCTATCGCTTACGGTCTCG 2923699 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | || || || | || || || ||| | ||||||||||| || | Sbjct 2923698 ACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTGGGTGGTGGTACCTTCG 2923639 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || | || ||||| || || || || || | || || ||||| | Sbjct 2923638 ATGTGTCCCTGCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGTGACA 2923579 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | ||| | ||||| || || || || || |||||||| || ||||| || ||||| | Sbjct 2923578 CTCATTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTTGTAAACGAATTCA 2923519 Query 349923 AGCGTCAAGCTAAAATTGATATTGGAGAT--AATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 | || || || | | | | ||| | || ||| | || ||||||| || | || Sbjct 2923518 AACGGAAATTCAAGAAGG--ACTTGAGCTCCAACCCTCGTGCTCTGCGTCGTCTCCGCAC 2923461 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 ||| || || ||||||||||| | | || ||| | | || || || || || || || Sbjct 2923460 TGCTTGCGAGCGTGCTAAGCGAACTCTGTCCTCTTCCGCTCAGACTTCCATCGAGATCGA 2923401 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || || ||| || || |||| | || || || |||||||| || || || | Sbjct 2923400 CTCCCTGTTTGAGGGTGTTGACTTCTACACCTCCATCACCCGTGCTCGTTTCGAGGAGCT 2923341 Query 350101 ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAA 350160 || ||| || || | | || || | || || || || | | || || || Sbjct 2923340 CTGCCAGGACCTCTTCCGCTCTACCCTGCAGCCCGTTGACCGTGTCCTGACCGACGCCAA 2923281 Query 350161 AATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAA 350220 || ||| |||| | | || | || | || || |||||||| ||||| || Sbjct 2923280 GATCGACAAGTCTCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCTACCCGTATCCCCCG 2923221 Query 350221 AGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCC 350280 | || || | | | || | || || ||||| || || | || || || || Sbjct 2923220 TATCCAGAAGCTGATCACGGACTACTTCAACGGCAAGGAGCCCAACAAGTCCATCAACCC 2923161 Query 350281 AGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAG 350340 ||||| |||||||| || ||||| || || ||||| | || | ||||| | | || Sbjct 2923160 CGATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGCCATCCTGTCTGGTGACACCAG 2923101 Query 350341 TTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGA 350397 || || | | || | | || || ||||| | || || || || || | || Sbjct 2923100 CTCCAAGTCCACCAACGAGATCCTGCTTCTGGATGTCGCACCGCTGTCTCTGGGTATTGA 2923041 Query 350398 AACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAA 350457 || |||||| | ||||| || || ||| | || | || | || || || || Sbjct 2923040 GACCGCTGGTGGTATGATGACCAAGCTCATCCCTCGCAACACCACCATTCCCACCAAGAA 2922981 Query 350458 GTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGA 350517 |||| | || ||||| || | || || ||||| | || || || || | || Sbjct 2922980 GTCCGAGGTCTTCTCTACCTTCTCCGACAACCAGCCTGGTGTCCTCATCCAGGTCTACGA 2922921 Query 350518 AGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAAT 350577 ||||| ||| ||||| || || || || || || | || || | | || Sbjct 2922920 GGGTGAGCGTCAGCGCACCAAGGACAACAACCTGCTCGGCAAGTTCGAGCTTACCGGCAT 2922861 Query 350578 TCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGG 350637 ||| || || | || ||||||||||| || ||| | |||||| ||||| | || || Sbjct 2922860 TCCCCCCGCACCCCGTGGTGTTCCTCAGATCGAGGTCACCTTCGATGTTGATGCCAACGG 2922801 Query 350638 TATTTTAAATGTTACCGCAGTTGAAAA 350664 ||| | || || |||| |||| || Sbjct 2922800 TATCATGAACGTCTCCGCCCTTGAGAA 2922774 >seq109 Length=4663 Score = 158 bits (174), Expect = 4e-33 Identities = 330/480 (69%), Gaps = 39/480 (8%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||| |||| ||||||||||||||||||| |||||||| ||||||| | ||| | Sbjct 2431 ATTGATCAAGTGCTTTTAGTTGGTGGTTCTACTCGTATTCCTGCAGTTCAAGATTTAGT- 2489 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCA----ATTAATCCAGATGAAGCTGT 350292 | ||| ||| | ||| ||| | ||| || | |||||||| ||||||| || Sbjct 2490 TAAAAGTG----AATTGAAAAAAAC-TCCTA-ATAAGAGTATTAATCCCGATGAAGTAGT 2543 Query 350293 TGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGA 350352 ||| ||| |||||| |||| | | ||| |||| ||| | ||| ||| Sbjct 2544 TGCTATTGGAGCTGCTATTCAAGGAGGAATTCTATCAGGAGAC----GTT---AAA---- 2592 Query 350353 TGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGT 350412 ||| | ||||| ||||||||||||||||||| | ||| | ||||||| ||| | || Sbjct 2593 -GATATTTTACTTTTAGATGTAACTCCACTTTCTTTAGGAATTGAAACTTTAGGTAATGT 2651 Query 350413 AATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACA---AAAAAGTCCCAAACTTT 350469 | ||| | ||| ||||||| |||| | || ||| ||||| ||| || Sbjct 2652 CTTTACTAAATTAATTGAAAGAAATACTACTATTCCAACATCTAAAAA---ACAAGTCTT 2708 Query 350470 TTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGC 350529 ||| || ||||| ||||| ||||| ||| ||||| || || |||| |||||| | Sbjct 2709 TTCAACTGCCGCAGACAATCAACCAGCAGTAGATATTCATGTTTTACAAGGAGAACGTCC 2768 Query 350530 --TCGCA-CTAAAGATAATAATAAACTTGGAGAATTTACC--CTAAGTGAAATTCCACCA 350584 | ||| || ||||||| |||||| | ||| | || ||| || ||||||||| Sbjct 2769 TTTAGCAGCT---GATAATA--AAACTTTGGGAAGATTCCAATTAACAGATATTCCACCA 2823 Query 350585 ATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTA 350644 ||| | ||| ||||||| |||||||| |||| || | ||| ||||||| ||| || Sbjct 2824 GCACCTCGCGGAATTCCTCAAATTGAAGTTACTTTTGACCTGGATGCAAATGGAATTGTA 2883 Score = 154 bits (170), Expect = 4e-32 Identities = 247/353 (70%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 349536 AAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAAT-TGCTGAAGCATATTTAGGT 349594 |||||||| ||||| |||| | || |||| ||| |||||||| |||||||| Sbjct 1780 AAGAAATTAGTGCAATGATTTTGGCAAATTTGAAAAAAAACTGCTGAAGATTATTTAGGA 1839 Query 349595 GAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCT 349654 | ||||| | | || || |||||||| || || |||||||||||||| || | Sbjct 1840 GCCCAAGTAAGTAAGGCAGTAATTACTGTTCCTGCTTATTTTAATGATGCTCAAAGACAG 1899 Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || |||||||| || | ||||| || ||||||||| | | || ||||| ||||| Sbjct 1900 GCTACCAAAGATGCAGGTAAAATTGCAGGCTTAAATGTTGAACGTATTATTAACGAACCA 1959 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 ||||| || || || | ||||| |||| ||| ||||| ||||| | | ||| | Sbjct 1960 ACTGCAGCTGCTCTTTCTTATGGTGTTGACAAA---GGTGACAAAGAACAGACCATTTTA 2016 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| ||||| || || ||||||||||| || | ||||| | | || || | | Sbjct 2017 GTGTTTGACTTAGGAGGAGGAACTTTTGATGTTTCTATTCTAACTTTGGTTGACGGTACT 2076 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||||||| | ||| |||| |||| | | || || || |||||||| Sbjct 2077 TTTGAAGTGCTTTCTACTTCTGGAGATAATGCTTTGGGAGGTGATGATTTTGA 2129 >seq5 Length=3440085 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||||||||| || || || || || || Sbjct 3138057 CATACCACCACGGAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 3137998 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || ||||| |||||||| || || ||||| || || Sbjct 3137997 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCTGG 3137938 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 3137937 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTC 3137878 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || || || ||||| Sbjct 3137877 GACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 3137827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247546788459