Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 295 7e-75 seq15 165 9e-36 >seq3 Length=3828249 Score = 295 bits (326), Expect = 7e-75 Identities = 488/700 (70%), Gaps = 6/700 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| || | ||| || || | || || ||||| |||| || |||||||| Sbjct 3342592 TGAGACTTACAACCTGATGTCGCACAAATTTTTCACACACGCATCGCCTACGCTGTTCAA 3342533 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| || |||||| ||||| |||||||| || | |||||||||||| Sbjct 3342532 CGCTGGTACACCCCAGCCTCAGCTGTCGTCATGCTTCCTCGTCGACATGAAGGATGACAG 3342473 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || |||||||| || |||||| || ||| ||||||||| | | || || Sbjct 3342472 CATTGAGGGTATCTACGATACTCTCAAGACATGCGCCATGATCTCCAAGATGGCCGGAGG 3342413 Query 53422 TATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| ||| | || | ||| | |||| || | ||| | || || || ||| Sbjct 3342412 TATTGGTCTGAACGTCCATCGTA--TCCGCGCCACTGGCTCTTATATAGCCGGTACCAAC 3342355 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 ||| | |||| ||| | || ||||| || |||||||||||||| ||||| ||||| Sbjct 3342354 GGCACGTCAAATGGTATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCCGTTACGTT 3342295 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 ||||||||||| ||||| || | ||||| |||||||| ||||| |||||||| Sbjct 3342294 GACCAGGGTGGTAACAAGCGTCCTGGTGCTTTCGCTATCTACCTGGAGCCATGGCACGCT 3342235 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 || | | ||||| ||||| |||| ||| || ||| | || ||| | || ||| Sbjct 3342234 GATGTCTTTGAGTTCCTCGATTTGCGAAAGAACCACGGTAAGGAGGAGGTCCGGGCCCGC 3342175 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||||| || || || |||||||| |||||||||||| | ||| |||||| ||| Sbjct 3342174 GACCTCTTCCTTGCCCTCTGGATTCCTGACCTCTTCATGAAGCGGGTTGAGAAGAACGGC 3342115 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGA 53778 || ||| ||| |||||||| |||||||||||||||| | | | || ||||||||| || Sbjct 3342114 GACTGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCTGAATG-CTACGGTGACGA 3342056 Query 53779 GTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 ||| | | |||| || ||||| | |||||| | |||| | ||||| Sbjct 3342055 GTTCGAGGCTCTGTACGAGAAGTACGAGAGAGAAGGCCGCGGCCGCAAGACCATGAAGGC 3341996 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 | || | ||| | || |||||| || |||| ||||| || | || | |||| Sbjct 3341995 TCAGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCCTTCATGCT 3341936 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||||| | |||| |||||||||||||||||| Sbjct 3341935 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAAC 3341896 Score = 102 bits (112), Expect = 9e-17 Identities = 293/436 (67%), Gaps = 21/436 (5%) Strand=Plus/Minus Query 55500 TGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGC 55559 |||| || ||||| ||||| || || | ||||| |||||||||||||| ||||||| Sbjct 3341354 TGGCACCCATGCCTACCGCATCCACATCGCAGATTCTGGGCAACAACGAGTGCTTCGAGC 3341295 Query 55560 CGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACA 55619 | ||||| | |||||||||| ||| || || || || ||||| || | || || Sbjct 3341294 CATACACCTCTAACATCTACCAGCGACGTGTGCTTGCTGGCGAGTTC--CAGG-TCGTCA 3341238 Query 55620 AGCAC---CTCGTCAAGGACCTG-CAGAAGATCAACAAGTGGAACCCGCAGATCAAGACG 55675 | | | || ||| ||||||| |||| ||| |||| | || |||| Sbjct 3341237 ACCCCTGGCTACTCAGGGACCTGACAGA-GATTGGTCTGTGGTCTGAGGCTATGAAGAAC 3341179 Query 55676 GATATTGT-GCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCG-TCTCAA 55731 |||| | || ||| | || || ||||||| || || ||| || | |||| Sbjct 3341178 CGTATTATTGCCGAA-GATGGTTCTATCCAGAACATCCCCAGCATCCCGGCCGATATCAA 3341120 Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGAGTGC 55788 || | ||| ||| || ||||| | | |||| || ||||| | ||| ||| Sbjct 3341119 GGCTTTGTACAAGACCGTCTGGGAAGTCTCCCAGAGGAC---GATTGTGCAGATGTCTGC 3341063 Query 55789 TGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTC 55848 ||| |||||||| | |||||||||||| |||||||| |||||| |||| | || | Sbjct 3341062 TGACCGTGGTGCCTTCATCGACCAGTCGCAGTCTCTCAACATCCACATGCGTGAGCCCAC 3341003 Query 55849 ACTGGCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 ||| |||| | | || | |||||||| ||| |||||| ||| ||||| || || | Sbjct 3341002 TATGGGCAAGATCA-CTAGCATGCACTTCACCGGCTGGAAGCTGGGTCTCAAAACTGGCA 3340944 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| || || || Sbjct 3340943 TGTACTACCTCCGCAC 3340928 >seq15 Length=682953 Score = 165 bits (182), Expect = 9e-36 Identities = 205/280 (73%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 || || ||||||||||||| ||| |||| ||| || ||||| |||||||| | |||||| Sbjct 481118 CGGGTAAAAATGTAACGAGCGCTGGCAGAATCGTTACCACCCGCAAGACGAGAACCGAAG 481059 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | || || ||||||| || || | |||||| | ||| ||||||||||| |||||| Sbjct 481058 TTACCGCTGGGCTCCAGGACATTTATGTTGTTCGAGCCTACAAAGTTTTGGGCCAAGCCA 480999 Query 117422 ACAATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 | ||||| || ||| || ||||| ||||| || || ||||| |||| | Sbjct 480998 ATGATCGTTTGCTGCAAAGAGACT----TCACCGTGGTGGTAAGCTGTCTGTTCCGAGAT 480943 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 ||| || |||| || | | |||||| ||||| |||| ||| ||||| |||||| || Sbjct 480942 GTAACCGGCCAACTCAACGACCTTCTTGTCTTTGGTCAAGTTACGCTTGAAGCAGGCGTA 480883 Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACG 117577 ||| || || | ||||| ||| |||||||| ||| | ||| Sbjct 480882 AATGACTTTCCTCTGACCTGGTTTCAGACCGTCCACAACG 480843 Score = 161 bits (178), Expect = 1e-34 Identities = 227/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 151998 GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATC 152057 ||| || |||| || | |||| |||||| || || ||||| || | |||||| | ||| Sbjct 481146 GAAAATGCGTCTAGCGAAAGGAGACAAACGGGTAAAAATGTAACGAGCGCTGGCAGAATC 481087 Query 152058 CTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTT 152117 || ||||| || || || | || || | || |||||| |||| || | |||||| Sbjct 481086 GTTACCACCCGCAAGACGAGAACCGAAGTTACCGCTGGGCTCCAGGACATTTATGTTGTT 481027 Query 152118 GGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTG 152177 | ||| || || || || ||||| | ||||| ||||| | |||||||||| Sbjct 481026 CGAGCCTACAAAGTTTTGGGCCAAGCCAATGATCGTTTGCTGCAAAGAGACTTCACCGTG 480967 Query 152178 GTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGT 152237 ||| || || ||||| |||| |||||| || ||||||| | |||||| |||| | || Sbjct 480966 GTGGTAAGCTGTCTGTTCCGAGATGTAACCGGCCAACTCAACGACCTTCTTGTCTTTGGT 480907 Query 152238 CAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCAC 152297 || ||| ||||| ||||||||||| || || | ||| |||||||| ||||||||| Sbjct 480906 CAAGTTACGCTTGAAGCAGGCGTAAATGACTTTCCTCTGACCTGGTTTCAGACCGTCCAC 480847 Query 152298 CACGTGAGGAATCGAACGC 152316 ||| ||||| || ||| Sbjct 480846 AACGGATGGAATGGATCGC 480828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213585409400