Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 176 1e-38 seq2 156 1e-32 seq4 134 3e-26 seq3 96.9 8e-15 >seq5 Length=3440085 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| |||||||| || |||||||| || || | ||||| | || || Sbjct 3137810 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3137751 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||||||||| | ||| ||||||||| Sbjct 3137750 TCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC 3137691 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| |||||||| || |||||||| ||||| ||| Sbjct 3137690 TGAATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 3137631 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 3137630 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3137599 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | || |||| |||||| Sbjct 3138266 AGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCATCT 3138207 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || || ||||| || || | || ||||||||| Sbjct 3138206 TCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 3138147 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||||||||| ||| || ||||| || || |||||| Sbjct 3138146 TGAATCTTGCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTTATCGTC 3138087 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| | ||||| || || | |||||| Sbjct 3138086 TTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || |||||||| || || | ||||| | || || Sbjct 3138038 AGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3137979 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 3137978 TCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 3137919 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || ||||| |||||||| ||| Sbjct 3137918 TGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 3137859 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 3137858 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 3137827 >seq2 Length=4895233 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || |||||||| ||| ||| || |||||||| || || | ||||| | || || || Sbjct 4675577 ACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 4675518 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||||| Sbjct 4675517 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGA 4675458 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || ||||||||||| ||| || ||||| || ||||| ||||| Sbjct 4675457 ATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTC 4675398 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || | |||||| Sbjct 4675397 CCCGTGAGGGTCTTGACGAAGATCTGCAT 4675369 >seq4 Length=3484069 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 949905 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 949846 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || |||||||| || | || ||||||||||||||||| || || || ||| Sbjct 949845 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 949786 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 949785 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 949727 >seq3 Length=3828249 Score = 96.9 bits (106), Expect = 8e-15 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGG 178142 |||| | |||||| ||||||||||| | |||| |||||| ||||| ||||||| Sbjct 3341889 TTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAAGG 3341945 Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202 | | || ||| | || ||| |||| ||| | ||| |||| ||| || | | Sbjct 3341946 GGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCATGG 3342005 Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 |||| | | ||||| |||||||||| | ||| || ||||||| || || | Sbjct 3342006 TCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGT 3342065 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322 || ||| | || ||||| ||| |||||||| | ||| |||| | |||| | || Sbjct 3342066 AGCATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCT 3342125 Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCA 178360 || || |||||||||||||||| |||||| |||| Sbjct 3342126 CAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCA 3342163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146757372845