Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 163 6e-35 seq2 159 7e-34 seq60 158 3e-33 seq4 147 5e-30 seq1 136 8e-27 seq15 93.3 9e-14 >seq5 Length=3440085 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | ||| || || |||||||||||||| | Sbjct 3137826 ACCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3137767 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||||||| || |||||| || Sbjct 3137766 GAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGG 3137707 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | ||||||||||| |||| || || Sbjct 3137706 GATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCCAC 3137647 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 3137646 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3137599 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | || || || |||||||||||||| | Sbjct 3138054 ACCACCACGGAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 3137995 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||||||||||| || || ||||| || Sbjct 3137994 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGG 3137935 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||||||||| || | ||||| Sbjct 3137934 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCGAC 3137875 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 3137874 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 3137827 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | || || || |||||||||||||||| Sbjct 3138281 CCACCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 3138222 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| |||||||| || | || || || || ||||| | ||| || ||||| || Sbjct 3138221 AGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3138162 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||| ||||| || ||| | ||||| |||||||| | || || Sbjct 3138161 ATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 3138103 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| |||||||| ||||| ||||| |||||||| Sbjct 3138102 CTCCAGTGTTATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 >seq2 Length=4895233 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| | || || || | ||||| || || |||||||||||||| | Sbjct 4675596 ACCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 4675537 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 4675536 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 4675477 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||| |||||||| | || || Sbjct 4675476 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCAC 4675417 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 4675416 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 4675369 >seq60 Length=13814 Score = 158 bits (174), Expect = 3e-33 Identities = 256/364 (70%), Gaps = 16/364 (4%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| | || || ||||| || || ||||| || || |||||||| |||||| || || Sbjct 12321 AAACTAGATCCTTATATTAATGTTGATCCTGGAACAATGAGCCCTTATCAACACGGTGAG 12262 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 || || || || ||||||||||||||||| ||||| ||| |||| || || ||| | || Sbjct 12261 GTCTTTGTCACTGATGATGGTGCTGAAACTGATCTTGATTTGGGTCATTATGAAAGATT- 12203 Query 301546 ACTTCATTAACCCTTAAGCGTGAAAGT--AATTTTACGACTGGCCAAGTTTATTTAAAAG 301603 | || || | | ||| ||||| || | || | || ||| ||||| || | Sbjct 12202 TTTAGATGAAAACATGAGC-AAAAAGTCAAACGTCACTGCAGGGCAAATTTATCAAAGTG 12144 Query 301604 TTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACA 301663 ||||| | || ||||| ||||||| || | || || || || ||||| |||| |||| Sbjct 12143 TTATCAATAAAGAACGTGAAGGTAAATACTTAGGTAAAACCGTTCAAGTAATTCCACACA 12084 Query 301664 TCACCGATGAAATCA---AAAGAAGAATTCACATTGCGGC------TGAAAAATCAGATA 301714 |||| || ||||||| ||| | |||| | ||| || | | ||||| ||| Sbjct 12083 TCACTGAAGAAATCAAACAAAAACTAATTGA---TGCTGCTCTTTTTCATAAATCTGATG 12027 Query 301715 TACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAG 301774 | |||||| |||||||||||| || || ||||| || ||||| |||||| |||||| Sbjct 12026 TTGTTATTGTAGAAATTGGAGGCACTGTAGGAGACATTGAATCATCGCCTTTTTTAGAAG 11967 Query 301775 CGAT 301778 | || Sbjct 11966 CTAT 11963 >seq4 Length=3484069 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 949905 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 949846 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 949845 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 949786 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 949785 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 949727 >seq1 Length=5395810 Score = 136 bits (150), Expect = 8e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || || | ||| ||||||||| | || ||| |||| ||| || Sbjct 863501 ATCATCACTGATGCCGTCGCCATTGAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGT 863442 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||||||||| || | || ||| ||| || ||||| ||||| || || ||| | Sbjct 863441 CTGCTCGGCATGAACGCCAACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTC 863382 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || ||||||| || || || |||| |||||||||| || |||||| Sbjct 863381 CTCGTCGCCCTTGGCAACGAGAAGGTCTACAAGTCCACCAACCCCTTCGACTTCATGGAG 863322 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| ||||||||| | || || || | | Sbjct 863321 AACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAG 863262 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 863261 GCCGGTGT 863254 >seq15 Length=682953 Score = 93.3 bits (102), Expect = 9e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| |||| || || | ||| || || ||||| || ||||| Sbjct 323052 GGGAAACCCTCGACCTGCTCGTTGTTGATAGCACGCATGAGGGTGGACTTTCCGGCACCG 322993 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||| ||||||||||| || || || ||| || | ||||||| |||| || Sbjct 322992 TTGGGACCGCAAAGACCGTAGCGTCGACCACGCTTGAGGCGGAGACGGGTGCTGTTGAGG 322933 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 |||||||| |||| || || || ||||||||||| || || |||| |||| Sbjct 322932 AGAATCTTGGCACCGTAGGCGAGGGAGAACTCACACTCGCAGAGGTTCTCG 322882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734465794862