Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq88 170 4e-37 >seq88 Length=140259 Score = 170 bits (188), Expect = 4e-37 Identities = 316/461 (69%), Gaps = 6/461 (1%) Strand=Plus/Minus Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCA 230239 ||||||| || |||| | |||||| ||||| | || ||| |||| | ||| Sbjct 57340 AGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCA 57281 Query 230240 TCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCA 230299 |||| |||||| ||| ||| |||||||||| || | || |||||| | ||| Sbjct 57280 TCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCT 57221 Query 230300 GTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACA 230359 ||| ||||||||||| || | |||| || ||| || | || |||| Sbjct 57220 CTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTGAGGAACC 57161 Query 230360 AGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGG 230416 | ||| | || || ||| | | ||||| || || || || | | || |||| Sbjct 57160 GCC--CCAG-CAAGGCGCGTGTCGAGAAGATCATCACTGATGCCGTCGTCATTGAGAAGG 57104 Query 230417 AGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGAC 230476 ||||| | || ||| |||| || | || | ||||||||||| | || ||| | Sbjct 57103 AGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACCTGATGAAGC 57044 Query 230477 AGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACA 230536 |||||||||| ||||| |||||||| | |||| || ||||| ||||||| || |||| Sbjct 57043 AGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCGCCCTTGGCAACGAGAAGGTCTACA 56984 Query 230537 ACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCT 230596 | |||| |||||||| | || |||||| ||| || ||| || ||||||||||||| Sbjct 56983 AGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCT 56924 Query 230597 TCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||| ||||||||| ||||||| |||| | | ||||| ||| Sbjct 56923 TCGAGAAGCGTGTCGGTGACTACCAGAAGGCCGGTGTCATG 56883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057817562149250