Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq88 205 1e-47
seq80 159 4e-34
seq4 141 1e-28
seq5 132 5e-26
>seq88
Length=140259
Score = 205 bits (226), Expect = 1e-47
Identities = 323/456 (71%), Gaps = 5/456 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| ||| |||||| | | | ||| | ||| || |||| |
Sbjct 57394 AGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCTACCTACGCTCAGCGTC 57335
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| |||||||| || || ||||| ||||||| || ||||||| |||| || |
Sbjct 57334 TGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCT 57275
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| ||||| | ||||| || ||||| ||| ||||||||| ||||| | |
Sbjct 57274 GGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTG 57215
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
||||||||||||| ||||| || || |||||||| || || | | || || |
Sbjct 57214 ACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTGAGGAACCGCCCCA 57155
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| |||||| ||| | ||||| |||| || || |||| ||| ||| || ||| | |
Sbjct 57154 GCAAGGCGCGTGTCGAGAAGATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCTTGA 57095
Query 117282 CCGAAGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339
|||| || || || ||| ||||||| || | || || || | |||| ||| |||||
Sbjct 57094 CCGAGGCTCTTCCC-TGCAGTCTGCTCGGCATGAAC-GCCAACCTGATGAAGCAGTACAT 57037
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||||||| |||||| | || || ||| || | | || ||| |||||| | |
Sbjct 57036 CGAGTTCGTGGCCGACCGTCTCCTTGTCGCCCTTGGCAACGAGAAGGTCTACAAGTCTAC 56977
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434
|||||| | ||||| ||| | ||||| ||||||
Sbjct 56976 CAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 56941
Score = 168 bits (186), Expect = 7e-37
Identities = 211/286 (74%), Gaps = 5/286 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||| ||||| || |||||||||| ||||||| | |||||
Sbjct 57806 ATCTGGCAGATGTACAAGAAGCATGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTT 57747
Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| | ||||||| | ||| ||||||| |||| | ||||||
Sbjct 57746 TCCAAGGACCTGCACGACTGGAGCAACCGCCTGAACGATGACGAAAAGTACTTCATCTCT 57687
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
| | || ||||| ||||| || ||| || || ||||||||||| ||||||||||||
Sbjct 57686 ACCATCCTTGCCTTCTTCGCTGCTTCCGATGGTATTGTCAACGAGAACCTGGTCGAGCGT 57627
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || | | |||| ||| | | ||||| || |||||||||||||| |||||| ||
Sbjct 57626 TTCAGCGCCG-AGGTCCAGATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGAT 57568
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | ||||| || | || || ||||||||||| |||
Sbjct 57567 GGAGAACATTCACTCCGAGACATACTCCCTGCTCATCGACACATAC 57522
>seq80
Length=149332
Score = 159 bits (176), Expect = 4e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || ||||||||| | || || || || |
Sbjct 52685 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTCG 52744
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || |||| ||||| |||||||||||| | ||||||
Sbjct 52745 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 52804
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| ||||| ||||| || |||| || |||||| ||||||||||
Sbjct 52805 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 52864
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||||||| ||| || || || |||||||||
Sbjct 52865 ATCCAGAAGGAGAGCACCCTTCACCTCGTGTTGCGC 52900
>seq4
Length=784365
Score = 141 bits (156), Expect = 1e-28
Identities = 159/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | ||
Sbjct 47392 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 47333
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || |||| ||||| ||||| ||||| | |||||
Sbjct 47332 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCA 47274
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || ||||| || |||| ||||||||| |||||||||
Sbjct 47273 GCAGCGCCTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 47214
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| |||| || || || ||
Sbjct 47213 CATCCAGAAGGAGTCCACCCTTCACCTCGT 47184
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || ||||| ||||| |||||||| | || ||||| || ||
Sbjct 47164 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 47105
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 47104 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 47045
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || ||||| || |||| || || || ||||||||||
Sbjct 47044 CAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTGTCCGACTACAAC 46985
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||||||| | || || ||
Sbjct 46984 ATTCAGAAGGAGTCTACTCTCCA 46962
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | ||||| ||||| || || | || || || || |
Sbjct 46936 ATGCAGATCTTCGTCAAGACATTGACGGGAAAAACGATAACACTAGAGGTGGAGTCCTCA 46877
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || || | ||||| ||||| ||||| | |||||
Sbjct 46876 GACACCATTGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCA 46818
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| || || ||| |||| || | || || || ||||||||
Sbjct 46817 GCAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCCGGACGCTGTCTGACTACAA 46758
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || |||||
Sbjct 46757 TATCCAGAAGGAGTCGACCCTGCA 46734
>seq5
Length=773751
Score = 132 bits (146), Expect = 5e-26
Identities = 138/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| | || ||||| || |||||| | |
Sbjct 717441 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 717500
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| ||| |
Sbjct 717501 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 717560
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||||
Sbjct 717561 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 717620
Query 40879 G 40879
|
Sbjct 717621 G 717621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216140886000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |