Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 5e-25
seq80 107 2e-18
seq5 98.7 9e-16
seq14 87.8 2e-12
>seq4
Length=784365
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| || ||||||||||| ||| || ||| || ||||||
Sbjct 46956 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCG 47015
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| || |||| || |||||||| ||||| || ||||||||||||||
Sbjct 47016 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 47075
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||| | | ||||||||| | || | || |||
Sbjct 47076 ATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 47135
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || ||||| || |||||
Sbjct 47136 CCAGTGAGGGTCTTGACAAAGATTTGCAT 47164
Score = 107 bits (118), Expect = 2e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| | ||||| ||||| ||||| |||||
Sbjct 47196 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCG 47255
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| || |||||||| || ||||| || ||||||||||| ||| || ||
Sbjct 47256 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGACTTG 47315
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| | ||| ||||||| ||| | || |||||||| || ||
Sbjct 47316 ACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 47375
Query 118722 TTTACAAAAATCTGCATGG 118740
|| || || ||||||||||
Sbjct 47376 TTGACGAAGATCTGCATGG 47394
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || || ||||| || || || || ||| ||
Sbjct 46727 CACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTCCGGCCATCTTC 46786
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||||||| |||||||||||||||| || || || || |||||||||||
Sbjct 46787 CAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTG 46846
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | || | |||||| | | ||| ||||| | || | ||||||
Sbjct 46847 GATCTTGCTCTTCACGTTGTCAATGGTGTCTGAGGACTCCACCTCTAGTGTTATCGTTTT 46906
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || || || ||||||||
Sbjct 46907 TCCCGTCAATGTCTTGACGAAGATCTGCAT 46936
>seq80
Length=149332
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|||||| | ||| | || ||| || || |||||||| ||| | || || ||
Sbjct 52897 CAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTC 52838
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||||||||| || || ||| |||| || |||||||| ||||| || ||||||||||||||
Sbjct 52837 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 52778
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
||| || || || | |||| |||||||| | ||| ||||| | ||| | ||
Sbjct 52777 CTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGT 52718
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || || || || |||||||||
Sbjct 52717 CTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 52684
>seq5
Length=773751
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| || ||||| |||||||||||| || || ||| ||||
Sbjct 717619 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 717560
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| || || || |||||||||||||| || || || || | |||
Sbjct 717559 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 717500
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| |||||| | | ||||||||| | ||| | || ||||| ||||| || || || ||
Sbjct 717499 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 717441
>seq14
Length=442650
Score = 87.8 bits (96), Expect = 2e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281
||||||| || || |||||||| || || || |||| | || | || || ||| | |
Sbjct 87486 GGTTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATG 87545
Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341
| ||||| | ||||||||||| || ||||||| || | || || |||||| |||||
Sbjct 87546 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGCGCCA 87605
Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401
|||||| ||||| | |||| || || || || || ||| | | ||||||||
Sbjct 87606 TCAACAAGCTGTTTCGGATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCC 87665
Query 133402 ACAGAT 133407
| ||||
Sbjct 87666 AAAGAT 87671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827888528700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |