Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq4 122 1e-22
seq80 116 4e-21
seq5 89.7 6e-13
>seq4
Length=784365
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | |||||| || |||| || |||||||| || || ||
Sbjct 46973 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCAAA 47032
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||||| || | || |||||||||| ||| || |||| |
Sbjct 47033 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 47092
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| || || || || | |||||||| ||||| || || ||||| ||
Sbjct 47093 GTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 47152
Query 43172 AAAGATTTGCAT 43183
||||||||||||
Sbjct 47153 AAAGATTTGCAT 47164
Score = 113 bits (124), Expect = 5e-20
Identities = 167/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| ||||| || | | ||| | |||||| |||| || |||||| || ||||||||
Sbjct 46704 TACTGTCCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAG 46763
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|||| ||| ||||| | || || | |||||| |||||||| ||||| |||||||||||
Sbjct 46764 TCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCT 46823
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | | |||||||||| ||| || || | ||| | | | ||||| ||
Sbjct 46824 GGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCA-CGTTGTCAATGGTGTCTGAGGA 46882
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || | || || ||||| ||||| | ||||| || ||||| |||||
Sbjct 46883 CTCCACCTCTAGTGTTATCGTTTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 46936
Score = 102 bits (112), Expect = 9e-17
Identities = 142/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || || ||
Sbjct 47201 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAA 47260
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || ||||||||||| | || | | |||||||||| ||| | || | |||| ||
Sbjct 47261 GATCAGGCGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 47318
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | | | |||||| || ||||| |||| |||||||| ||||| || || |||||
Sbjct 47319 TTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 47378
Query 43170 ACAAAGATTTGCAT 43183
|| ||||| |||||
Sbjct 47379 ACGAAGATCTGCAT 47392
>seq80
Length=149332
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||||||| | || | ||||||||||| || || ||||| || | || || || ||
Sbjct 52899 CGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCG 52840
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||||| || | || |||||||
Sbjct 52839 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 52780
Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| | || | |||| | | | ||||| || ||||| || | |||||
Sbjct 52779 TCC-TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGAT 52721
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || ||||| || ||||| || ||||| |||||
Sbjct 52720 GGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 52685
>seq5
Length=773751
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||| || || | || || |||||||| || ||||| |
Sbjct 717621 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 717562
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 717561 TCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 717502
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | |||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 717501 CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 717442
Query 43174 AG 43175
||
Sbjct 717441 AG 717440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814204833000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |