Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 >seq2 Length=950389 Score = 123 bits (136), Expect = 2e-23 Identities = 215/304 (71%), Gaps = 14/304 (5%) Strand=Plus/Minus Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||||| ||||| | |||| | ||||||||| || || |||||| | | ||| |||| Sbjct 623842 CACGTAGAACTG-CGCAAACATGTGACAAGGCGGCAGCGCCATCTTCTTCAAGTCGGCGG 623784 Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGT--GGGGCCGCCTGTTAATTAGATCCAC 21226 |||||||||||| ||| | |||||| || |||| ||| || | | || | || Sbjct 623783 GGTTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCGCAGCTTG--TGGAC 623726 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286 || | ||||||||| || ||||| ||| ||||| || | ||| | |||||| Sbjct 623725 GACCTCGGCCAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGTGCGGGCGTCGACGTACTC 623666 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGGCG 21343 || || || || | |||||||||||||||||| || ||||| |||| |||||||| | Sbjct 623665 GGCGCCGAAGTGGCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCGGCCTCGCGGTG 623606 Query 21344 GTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA 21402 | ||| ||||| ||| | | | || |||| || |||| ||||||| || || | Sbjct 623605 G---CCG-AGCCCGACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGA 623550 Query 21403 CGCC 21406 |||| Sbjct 623549 CGCC 623546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427773523578000