Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq88 98.7 7e-16 >seq88 Length=140259 Score = 98.7 bits (108), Expect = 7e-16 Identities = 289/445 (65%), Gaps = 8/445 (2%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| | ||||| || |||||||| || || | || || | || || |||| Sbjct 57338 CGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATC 57279 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||||||||| || | ||||| || || | || ||||||||| |||| Sbjct 57278 TTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCT 57219 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 |||||||| ||||| ||| |||||| ||||| ||||||| || || | || Sbjct 57218 CGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTG----AGGAA 57163 Query 22921 CCGTGTCAGGACGATGCACATC----AAATCATATCTGATGCCGTTGACATTGAGACGGC 22976 ||| ||| | | || || | ||||| |||||||||| | |||||||| || Sbjct 57162 CCGCCCCAGCAAGGCGCGTGTCGAGAAGATCATCACTGATGCCGTCGTCATTGAGAAGGA 57103 Query 22977 TTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACT 23036 ||||| ||||| || || || || ||||| || |||| | Sbjct 57102 GTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACCTGATGAAGCA 57043 Query 23037 GTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAA 23096 |||||| |||| || || || || || || | ||||| || | | ||| | || || Sbjct 57042 GTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCGCCCTTGGCAACGAGAAGGTCTACAA 56983 Query 23097 CGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTT 23156 | |||| || || || |||||||| ||||| | ||| || || || |||||||| Sbjct 56982 GTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTT 56923 Query 23157 TGAACGCCGTGTGAGTGAATATCAG 23181 || ||||| |||| || ||| Sbjct 56922 CGAGAAGCGTGTCGGTGACTACCAG 56898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356231537741425