Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq14 163 4e-35
seq88 134 2e-26
>seq14
Length=442650
Score = 163 bits (180), Expect = 4e-35
Identities = 337/496 (68%), Gaps = 4/496 (1%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||| || ||||| || || || ||| | || ||||| |||| ||
Sbjct 88554 CGTTACGTTGACCAGGGTGGTAATAAGCGTCCTGGTGCTTTCGCTATCTACCTGGAGCCA 88495
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || || |||| |||| || ||| || || ||||
Sbjct 88494 TGGCACGCTGATGTCTTCGAGTTCCTCGACTTGCGAAAGAACCACGGTAAGGAGGAGGTC 88435
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|||||| | ||| | || ||| |||||| | || || | ||||||||||| || |
Sbjct 88434 CGAGCCCGCGACCTCTTCCTTGCTCTCTGGATTCCTGACCTCTTCATGAAGCGGGTTGAG 88375
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| ||| |||||| ||| ||||||||| || || || || || | || ||||
Sbjct 88374 AAGAACGGCGACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 88315
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162
|| || ||||| ||||| |||| | |||||| ||| ||||| || ||||
Sbjct 88314 GGTGACGAGTTCGAGGCTCTGTACGAGAAGTACGAGAGAGAAGGCCGCGGCCGCAAGACC 88255
Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| | | || | |||| |||||| | |||||| | ||| ||| ||||| || | |
Sbjct 88254 A-TGAAGGCTC-AGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACC 88197
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281
| | ||| |||||||||||| || || ||||| |||||||| || |||| ||||
Sbjct 88196 CTTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCA 88137
Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341
|| ||||||| |||||||| || || | |||||| |||| || ||| ||| |
Sbjct 88136 TCCGCAGCTCCAACCTGTGCACCGAGATCATCGAGTACTGTGCTCCTGATGAGGTGGCTG 88077
Query 97342 TTTGCGTTCTGGCATC 97357
| ||| ||||| ||
Sbjct 88076 TCTGCAACCTGGCCTC 88061
>seq88
Length=140259
Score = 134 bits (148), Expect = 2e-26
Identities = 333/500 (67%), Gaps = 19/500 (4%)
Strand=Plus/Minus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| ||||| ||||| | |||| | ||||||| ||| || ||||| | |||||
Sbjct 57401 ATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCTACCTACGCT 57342
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| | ||||| || ||||| || || ||||| |||||||| ||| ||| || ||
Sbjct 57341 CAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCC 57282
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| ||||| ||||||||||| | ||||| || ||||| | |||||| | ||
Sbjct 57281 ATCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATC 57222
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598
||||| |||||||| || ||| |||||| || || ||||| || || || | |
Sbjct 57221 TCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTGAGGAAC 57162
Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658
||| | ||| | | | || ||| ||||| || |||||||| |
Sbjct 57161 CGCCCCA--GCAAGGCGCGTGTCGAGAAGATCATC---------ACTGATGCCGTCGTCA 57113
Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718
| || | ||||| | ||||| | || || ||| || | ||||||||| ||| |
Sbjct 57112 TTGAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACC 57053
Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG 125776
| ||| ||||||| ||||| ||||| || ||||| || || ||||| ||
Sbjct 57052 TGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCG---CCCTTGGCAACG 56996
Query 125777 -CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835
||| | ||||| | | || ||||| || |||||| | ||| || || | || |
Sbjct 56995 AGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCA 56936
Query 125836 AGACCAACTTTTTCGAGAAG 125855
|||||||||| |||||||||
Sbjct 56935 AGACCAACTTCTTCGAGAAG 56916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741054799961000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |