Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq14 163 4e-35 seq88 134 2e-26 >seq14 Length=442650 Score = 163 bits (180), Expect = 4e-35 Identities = 337/496 (68%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||| || ||||| || || || ||| | || ||||| |||| || Sbjct 88554 CGTTACGTTGACCAGGGTGGTAATAAGCGTCCTGGTGCTTTCGCTATCTACCTGGAGCCA 88495 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || |||| |||| || ||| || || |||| Sbjct 88494 TGGCACGCTGATGTCTTCGAGTTCCTCGACTTGCGAAAGAACCACGGTAAGGAGGAGGTC 88435 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 |||||| | ||| | || ||| |||||| | || || | ||||||||||| || | Sbjct 88434 CGAGCCCGCGACCTCTTCCTTGCTCTCTGGATTCCTGACCTCTTCATGAAGCGGGTTGAG 88375 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| ||| ||||||||| || || || || || | || |||| Sbjct 88374 AAGAACGGCGACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 88315 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162 || || ||||| ||||| |||| | |||||| ||| ||||| || |||| Sbjct 88314 GGTGACGAGTTCGAGGCTCTGTACGAGAAGTACGAGAGAGAAGGCCGCGGCCGCAAGACC 88255 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | | | || | |||| |||||| | |||||| | ||| ||| ||||| || | | Sbjct 88254 A-TGAAGGCTC-AGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACC 88197 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| || || ||||| |||||||| || |||| |||| Sbjct 88196 CTTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCA 88137 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 || ||||||| |||||||| || || | |||||| |||| || ||| ||| | Sbjct 88136 TCCGCAGCTCCAACCTGTGCACCGAGATCATCGAGTACTGTGCTCCTGATGAGGTGGCTG 88077 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| ||||| || Sbjct 88076 TCTGCAACCTGGCCTC 88061 >seq88 Length=140259 Score = 134 bits (148), Expect = 2e-26 Identities = 333/500 (67%), Gaps = 19/500 (4%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || ||||| ||||| | |||| | ||||||| ||| || ||||| | ||||| Sbjct 57401 ATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCTACCTACGCT 57342 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | ||||| || ||||| || || ||||| |||||||| ||| ||| || || Sbjct 57341 CAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCC 57282 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| ||||||||||| | ||||| || ||||| | |||||| | || Sbjct 57281 ATCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATC 57222 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598 ||||| |||||||| || ||| |||||| || || ||||| || || || | | Sbjct 57221 TCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTGAGGAAC 57162 Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658 ||| | ||| | | | || ||| ||||| || |||||||| | Sbjct 57161 CGCCCCA--GCAAGGCGCGTGTCGAGAAGATCATC---------ACTGATGCCGTCGTCA 57113 Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718 | || | ||||| | ||||| | || || ||| || | ||||||||| ||| | Sbjct 57112 TTGAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACC 57053 Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG 125776 | ||| ||||||| ||||| ||||| || ||||| || || ||||| || Sbjct 57052 TGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCG---CCCTTGGCAACG 56996 Query 125777 -CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 ||| | ||||| | | || ||||| || |||||| | ||| || || | || | Sbjct 56995 AGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCA 56936 Query 125836 AGACCAACTTTTTCGAGAAG 125855 |||||||||| ||||||||| Sbjct 56935 AGACCAACTTCTTCGAGAAG 56916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054799961000