Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4 113 1e-19
seq80 91.5 3e-13
>seq4
Length=784365
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | ||||| || || || |||||
Sbjct 47196 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCG 47255
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || |||||||| ||||| || || ||||||||||| | ||
Sbjct 47256 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGACTTG 47315
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || ||| || || ||||| || || || ||||| || || || ||
Sbjct 47316 ACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 47375
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 47376 TTGACGAAGATCTGCAT 47392
Score = 102 bits (112), Expect = 2e-16
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| ||||| |||||||| || || | || ||||| | || ||||||
Sbjct 46740 GTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCA 46799
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || ||||| || || ||||| ||||| ||| ||
Sbjct 46800 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT-GCTCTT 46858
Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| || | || ||||||||||| || || || || || | |||
Sbjct 46859 CACGTTGTCAATGGTGTCTGAGGACTCCACCTCTAGTGTTATCGTTTTTCCCGTCAATGT 46918
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 46919 CTTGACGAAGATCTGCAT 46936
>seq80
Length=149332
Score = 91.5 bits (100), Expect = 3e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| || || ||||| || || || | ||||| || || || || || || ||
Sbjct 52875 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 52816
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||| || || || || || || || || ||||||||||| | || |||||
Sbjct 52815 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 52756
Query 104489 TCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547
|| | ||| || | ||| || ||||| || || || ||||| || || || || || ||
Sbjct 52755 TCGATGGTGTC-CGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGAC 52697
Query 104548 AAATATCTGCAT 104559
|| ||||||||
Sbjct 52696 GAAGATCTGCAT 52685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151391392661300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |