Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 113 1e-19 seq80 91.5 3e-13 >seq4 Length=784365 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || ||||| Sbjct 47196 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCG 47255 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || |||||||| ||||| || || ||||||||||| | || Sbjct 47256 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGACTTG 47315 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || || ||||| || || || ||||| || || || || Sbjct 47316 ACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 47375 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 47376 TTGACGAAGATCTGCAT 47392 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| |||||||| || || | || ||||| | || |||||| Sbjct 46740 GTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCA 46799 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || ||||| || || ||||| ||||| ||| || Sbjct 46800 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT-GCTCTT 46858 Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || ||||||||||| || || || || || | ||| Sbjct 46859 CACGTTGTCAATGGTGTCTGAGGACTCCACCTCTAGTGTTATCGTTTTTCCCGTCAATGT 46918 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 46919 CTTGACGAAGATCTGCAT 46936 >seq80 Length=149332 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || || | ||||| || || || || || || || Sbjct 52875 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 52816 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || || ||||||||||| | || ||||| Sbjct 52815 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 52756 Query 104489 TCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || | ||| || ||||| || || || ||||| || || || || || || Sbjct 52755 TCGATGGTGTC-CGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGAC 52697 Query 104548 AAATATCTGCAT 104559 || |||||||| Sbjct 52696 GAAGATCTGCAT 52685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391392661300