Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq117 127 2e-24 >seq117 Length=95901 Score = 127 bits (140), Expect = 2e-24 Identities = 185/254 (73%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||||| ||||| ||||| ||||| | | | || ||||| || ||||| | Sbjct 31032 CCCGTGGAGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCCAGCTCCGTGACCTCCATC 31091 Query 5564 ACATCGGGGAACGCAGC-GCGCTCGCAGATC-AGCTGCGCTATTCGGTCGCCCGTCTTTA 5621 || |||||| | || ||||||| ||| | ||||| || | ||||||||| | Sbjct 31092 ACCTCGGGGGT-GTAGATGCGCTCG-AGAACGAGCTGGGCGACGCGGTCGCCCTCGGCCA 31149 Query 5622 CCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 ||| ||| ||| || |||| |||||||| | || || | ||| |||||||| Sbjct 31150 CCTGGAAGTCGGCGT--CCGAGTGGTTGAACAAGAGGACCTTGACCTGGCCACGGTAGTC 31207 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||||| || |||||||||||| |||||||||||||||| | || |||||||||||||| Sbjct 31208 GGCGTCGATGACGCCCGCGCCCGTGTCGATGAAGTGCTTGGCTGCTAGGCCGGAGCGGGG 31267 Query 5740 AGCCACGCGGCCGT 5753 || | |||||||| Sbjct 31268 GGCGATGCGGCCGT 31281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430051910388200