Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq328 107 3e-19 seq54 104 4e-18 >seq328 Length=1520 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 137 GCCAAGCGTCACAGGAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 195 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| || ||||||||||| ||||||||| |||||| Sbjct 196 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTCTG 236 >seq54 Length=201958 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 134555 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 134497 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 134496 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 134456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074765704175