Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq389 140 2e-28 seq22 138 8e-28 seq457 127 1e-24 seq441 104 2e-17 seq80 98.7 7e-16 seq4 89.7 3e-13 >seq389 Length=623 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 488 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 547 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 548 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 582 >seq22 Length=350476 Score = 138 bits (152), Expect = 8e-28 Identities = 201/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260 ||||| |||||||| ||| ||| || |||||||||| || ||||| |||||||| Sbjct 119372 TTCTATCGCTACAAGATGGAGCGTCTCCAGACCAAGGTCGAAGGCAAGGGCAACGGTATC 119313 Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320 || ||||||||||||||| || | ||||| || | |||| || |||| | ||||| Sbjct 119312 AAGACCGTCATTGTCAACCTGACCAGCGTCGCCCAGTCCCTCGCTCGTCCTGGCTCCTAC 119253 Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || | ||||| | ||||||||| |||||||| | |||| | ||| | || Sbjct 119252 TTGATCAAGTTCTTCGGTTTCGAACTTGGTGCTCAGACCAACATTGACCCCAAGGATGAT 119193 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| | ||||| | ||| | ||| |||||| |||||| | ||||| ||| Sbjct 119192 CGCTGGATCATCAACGGTGCTCATGAGTCTAGCAAGCTCCAGGACCTTCTTGATATCTTC 119133 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || |||||||| || || | | ||| | || || ||||| Sbjct 119132 ATCAAGAAGTTTGTTCTCTGCCACAAGTGCAAGAATCCCGAGAC 119089 >seq457 Length=235 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 100 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 159 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 160 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 194 >seq441 Length=281 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 89 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 148 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 149 GCCGGTATTTAGCCTTA 165 >seq80 Length=149332 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||||| | ||||| ||||||||||| || || ||||| || || Sbjct 52912 ACCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 52853 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | ||| |||| || | || || ||||| || || ||||| || || |||| ||| Sbjct 52852 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 52793 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| ||| || ||| ||||| | || || || || || Sbjct 52792 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCAC 52733 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | ||| || ||||| ||||||||| Sbjct 52732 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 52684 >seq4 Length=784365 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || ||||| |||||| ||||| ||||| || |||| | ||| |||| || Sbjct 46956 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCG 47015 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||||||||| || ||||| || || |||| ||||| ||| || |||||| Sbjct 47016 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 47075 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATC 38257 || || ||| ||||| | || ||| || Sbjct 47076 ATCTTGGACTTGACATTGTCGATAGTGTC 47104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945260969725