Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq389 140 2e-28
seq22 138 8e-28
seq457 127 1e-24
seq441 104 2e-17
seq80 98.7 7e-16
seq4 89.7 3e-13
>seq389
Length=623
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 488 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 547
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 548 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 582
>seq22
Length=350476
Score = 138 bits (152), Expect = 8e-28
Identities = 201/284 (71%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260
||||| |||||||| ||| ||| || |||||||||| || ||||| ||||||||
Sbjct 119372 TTCTATCGCTACAAGATGGAGCGTCTCCAGACCAAGGTCGAAGGCAAGGGCAACGGTATC 119313
Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320
|| ||||||||||||||| || | ||||| || | |||| || |||| | |||||
Sbjct 119312 AAGACCGTCATTGTCAACCTGACCAGCGTCGCCCAGTCCCTCGCTCGTCCTGGCTCCTAC 119253
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| || | ||||| | ||||||||| |||||||| | |||| | ||| | ||
Sbjct 119252 TTGATCAAGTTCTTCGGTTTCGAACTTGGTGCTCAGACCAACATTGACCCCAAGGATGAT 119193
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| ||| | ||||| | ||| | ||| |||||| |||||| | ||||| |||
Sbjct 119192 CGCTGGATCATCAACGGTGCTCATGAGTCTAGCAAGCTCCAGGACCTTCTTGATATCTTC 119133
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
|| |||||||| || || | | ||| | || || |||||
Sbjct 119132 ATCAAGAAGTTTGTTCTCTGCCACAAGTGCAAGAATCCCGAGAC 119089
>seq457
Length=235
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 100 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 159
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 160 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 194
>seq441
Length=281
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 89 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 148
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 149 GCCGGTATTTAGCCTTA 165
>seq80
Length=149332
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||||||| | ||||| ||||||||||| || || ||||| || ||
Sbjct 52912 ACCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 52853
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| ||| |||| || | || || ||||| || || ||||| || || |||| |||
Sbjct 52852 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 52793
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||| || |||||| ||| || ||| ||||| | || || || || ||
Sbjct 52792 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCAC 52733
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || ||||| | ||| || ||||| |||||||||
Sbjct 52732 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 52684
>seq4
Length=784365
Score = 89.7 bits (98), Expect = 3e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
||||| || ||||| |||||| ||||| ||||| || |||| | ||| |||| ||
Sbjct 46956 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCG 47015
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| || ||||||||||| || ||||| || || |||| ||||| ||| || ||||||
Sbjct 47016 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 47075
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATC 38257
|| || ||| ||||| | || ||| ||
Sbjct 47076 ATCTTGGACTTGACATTGTCGATAGTGTC 47104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945260969725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |