Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq80 114 1e-20
seq4 109 5e-19
seq5 93.3 4e-14
>seq80
Length=149332
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| || |
Sbjct 52685 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTCG 52744
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| ||||||||||| || || ||||| ||
Sbjct 52745 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 52804
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || |||||||| ||| | ||||| ||| ||| ||||||| ||||||
Sbjct 52805 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 52864
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||| | || | || ||||| | || || |||
Sbjct 52865 ATCCAGAAGGAGAGCACCCTTCACCTCGTGTTGCGCCTCCGTGGTGGT 52912
>seq4
Length=784365
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || |||||||||| || || || ||
Sbjct 47164 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 47105
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || || || ||||||||||| || || ||||| ||
Sbjct 47104 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 47045
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || |||||||| || ||| | ||||| || || | ||||| ||||||
Sbjct 47044 CAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTGTCCGACTACAAC 46985
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || || | || || ||| | || | || || |||
Sbjct 46984 ATTCAGAAGGAGTCTACTCTCCACTTGGTTCTCCGCCTTCGTGGTGGT 46937
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| | ||
Sbjct 47392 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 47333
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || ||||| ||||||||||| || || || || ||
Sbjct 47332 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCAG 47273
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || |||||||| || ||| | ||||| ||||||| ||||||| ||||||
Sbjct 47272 CAGCGCCTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 47213
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 47212 ATCCAGAAGGAGTCCACC 47195
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || || |||||| | || || || ||||| || |
Sbjct 46936 ATGCAGATCTTCGTCAAGACATTGACGGGAAAAACGATAACACTAGAGGTGGAGTCCTCA 46877
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || || || ||||||||||| || ||||| || ||
Sbjct 46876 GACACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 46817
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||||| || ||| ||| || | || || |||||
Sbjct 46816 CAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCCGGACGCTGTCTGACTACAAT 46757
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || || ||| | || || || | || |||| || ||
Sbjct 46756 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 46710
>seq5
Length=773751
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| || || || |||| ||| | ||| || ||||
Sbjct 717456 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 717515
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || || || || || || | || || ||||||||
Sbjct 717516 AAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAG 717575
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
||| | |||||| ||||||| | ||||| |||||||| || ||
Sbjct 717576 CAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 717619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725570168375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |