Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq36 116 8e-21 seq88 114 3e-20 seq35 114 3e-20 >seq36 Length=274094 Score = 116 bits (128), Expect = 8e-21 Identities = 378/571 (66%), Gaps = 27/571 (5%) Strand=Plus/Minus Query 87362 CACCAGCGGTTGACATTTTCCTTCCTGTGTGTGGTGAGGATCTTCTCATTATCAACAACA 87421 |||| |||| ||||| | ||| || ||||| | ||||| || || | |||||| Sbjct 3622 CACCGACGGTGGACATCTACCTGCCGGTGTGCGCCGAGGAGCTCGAGATCCTGGACAACA 3563 Query 87422 CTTGGAACTACGTGTCTAAGCTGGACTGGCC------CAATCTACGCGTTCACGTCCTTG 87475 | ||||| ||||| | |||||||||||| ||| | | || ||||| || | Sbjct 3562 CGTGGAAGCACGTGACGGCGCTGGACTGGCCGGCGGACAAGATCCAGGTGCACGTGCTCG 3503 Query 87476 ACGACGGAAAGAGCGATGAAGTCAAGCAGCTGGCAGGTCGCTTTGGTTTCAATTAC-TC- 87533 ||||||| | || | || || |||||| | || | || ||||| ||| || Sbjct 3502 ACGACGGGGCCAAGGACGTGGTGCGGCGGCTGGCGGAGCGGTACGGCTTCAACTACATCG 3443 Query 87534 TACTCGTTCTACCAACTACA--TGAAGAAGGCCGGCAATCTTCGCGATGCTTTTGCC--- 87588 | | || ||| | | | |||||||| ||||| || || || || ||| Sbjct 3442 TGCGCGGGG-ACCGGCCGCGGCTCAAGAAGGCGGGCAACCTGCGGTGGGCCTTCGCCCGC 3384 Query 87589 AAGACGAGCGCACCATTCTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTC 87648 | |||| ||| || ||||| | ||||||||| || ||||||||||| ||| ||||||| Sbjct 3383 ACGACGGGCG-AC--TTCTTCGCCATCTTCGACGCCGACTTCTGCCCCCGCCCGGACTTC 3327 Query 87649 ATCACGGAAATTATG--CCAT-ACTTCAACTATGACAAATCCATCGCCATCGTCCAGACC 87705 || || | ||| | | | || || | ||||| ||||||||||| |||| | Sbjct 3326 CTCCGCGAGCTGATGGTCGAGCAGCTCGACGACGACAAG---ATCGCCATCGTGCAGAGC 3270 Query 87706 CCCCAGTTCTTTGAGGTGCGTCCA-GACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGT 87764 ||||||||||| || | | | || ||||| ||||| |||| | || || | Sbjct 3269 CCCCAGTTCTTCCGCGT-CACCGATGAGCAGACCTGGGTCGAGCAGGGCGCCGGCGCCAC 3211 Query 87765 CCAGGAACTGTTCTACCGCTTCATCCAGGTGTCTCGCGAATCATTTGGCGCT-GCAGTGT 87823 ||||| |||||||||||| || | ||||| ||| || | |||||| ||| | | Sbjct 3210 GCAGGAGCTGTTCTACCGCGTCGTGCAGGTCAATCGGGACCGGTGGGGCGCTAGCA-TCT 3152 Query 87824 GCGTGGGTACTTGTGCTATGTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTG 87883 | || || | | ||| |||| ||||| | ||||| | | |||| || || |||| Sbjct 3151 GTGTCGGGAGTAATGCGTTGTACCGTCGGGCTGCCCTTGAGGAGGTTGGTGGTACGGCTG 3092 Query 87884 AAATCGGTTTCAGCGAGGATGTCCACACCGG 87914 | || || ||| |||||||| ||||| || Sbjct 3091 AGATTGGGTTCTCTGAGGATGTGCACACGGG 3061 >seq88 Length=140259 Score = 114 bits (126), Expect = 3e-20 Identities = 246/364 (68%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 56920 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTA 56979 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | |||||| || || | || ||||| ||||| ||||| | Sbjct 56980 GACTTGTAGACCTTCTCGTTGCCAAGGGCGACAAGGAGACGGTCGGCCACGAACTCGATG 57039 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | | ||||||||| | || || || |||| ||||| | | Sbjct 57040 TACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACTGCAGGGAAGAGCCTCGGTCAAG 57099 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| || || | || || || | || || || | ||| | Sbjct 57100 AACTCCTTCTCAATGACGACGGCATCAGTGATGATCTTCTCGACACGCGCCTTGCTGGGG 57159 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGTCGC 251860 |||| ||| | ||| |||| | || || || | || ||||||||||||||| | Sbjct 57160 CGGTTCCTCAGGTGAGAGAACAGCAGGCAAGCGAAGTCAGT--GTGCAGACCCTCGTCAC 57217 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 || ||| | ||||||||| | ||| |||||||||| || || ||| | ||||||| Sbjct 57218 GAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAAACCGCGCTTCTTCAGCCAGA 57277 Query 251921 AGAT 251924 |||| Sbjct 57278 AGAT 57281 >seq35 Length=278380 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| |||||||| ||||| ||||| || ||||| ||| | ||| Sbjct 92995 TCTCTGGGCTCTCGTATTGCCGTCATTGGCCCCAACGGTGCTGGAAAGTCCACCTTGATC 93054 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || ||| |||| || ||| | |||| ||||| ||||| || ||||| Sbjct 93055 AACGTCTTGACCGGTGAGCTCATCCCCACCGAGGGTGAGATTTGGTCCCACGAGAACATC 93114 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| || |||||||||||| ||||||||| ||||||||||||| ||| Sbjct 93115 CGTATCGCCTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACC 93174 Query 280332 CCTAACCAATACATTCAGTGGCG 280354 || | | ||||| |||||||| Sbjct 93175 CCATCCGAGTACATCCAGTGGCG 93197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830544649475