Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq36 116 8e-21
seq88 114 3e-20
seq35 114 3e-20
>seq36
Length=274094
Score = 116 bits (128), Expect = 8e-21
Identities = 378/571 (66%), Gaps = 27/571 (5%)
Strand=Plus/Minus
Query 87362 CACCAGCGGTTGACATTTTCCTTCCTGTGTGTGGTGAGGATCTTCTCATTATCAACAACA 87421
|||| |||| ||||| | ||| || ||||| | ||||| || || | ||||||
Sbjct 3622 CACCGACGGTGGACATCTACCTGCCGGTGTGCGCCGAGGAGCTCGAGATCCTGGACAACA 3563
Query 87422 CTTGGAACTACGTGTCTAAGCTGGACTGGCC------CAATCTACGCGTTCACGTCCTTG 87475
| ||||| ||||| | |||||||||||| ||| | | || ||||| || |
Sbjct 3562 CGTGGAAGCACGTGACGGCGCTGGACTGGCCGGCGGACAAGATCCAGGTGCACGTGCTCG 3503
Query 87476 ACGACGGAAAGAGCGATGAAGTCAAGCAGCTGGCAGGTCGCTTTGGTTTCAATTAC-TC- 87533
||||||| | || | || || |||||| | || | || ||||| ||| ||
Sbjct 3502 ACGACGGGGCCAAGGACGTGGTGCGGCGGCTGGCGGAGCGGTACGGCTTCAACTACATCG 3443
Query 87534 TACTCGTTCTACCAACTACA--TGAAGAAGGCCGGCAATCTTCGCGATGCTTTTGCC--- 87588
| | || ||| | | | |||||||| ||||| || || || || |||
Sbjct 3442 TGCGCGGGG-ACCGGCCGCGGCTCAAGAAGGCGGGCAACCTGCGGTGGGCCTTCGCCCGC 3384
Query 87589 AAGACGAGCGCACCATTCTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTC 87648
| |||| ||| || ||||| | ||||||||| || ||||||||||| ||| |||||||
Sbjct 3383 ACGACGGGCG-AC--TTCTTCGCCATCTTCGACGCCGACTTCTGCCCCCGCCCGGACTTC 3327
Query 87649 ATCACGGAAATTATG--CCAT-ACTTCAACTATGACAAATCCATCGCCATCGTCCAGACC 87705
|| || | ||| | | | || || | ||||| ||||||||||| |||| |
Sbjct 3326 CTCCGCGAGCTGATGGTCGAGCAGCTCGACGACGACAAG---ATCGCCATCGTGCAGAGC 3270
Query 87706 CCCCAGTTCTTTGAGGTGCGTCCA-GACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGT 87764
||||||||||| || | | | || ||||| ||||| |||| | || || |
Sbjct 3269 CCCCAGTTCTTCCGCGT-CACCGATGAGCAGACCTGGGTCGAGCAGGGCGCCGGCGCCAC 3211
Query 87765 CCAGGAACTGTTCTACCGCTTCATCCAGGTGTCTCGCGAATCATTTGGCGCT-GCAGTGT 87823
||||| |||||||||||| || | ||||| ||| || | |||||| ||| | |
Sbjct 3210 GCAGGAGCTGTTCTACCGCGTCGTGCAGGTCAATCGGGACCGGTGGGGCGCTAGCA-TCT 3152
Query 87824 GCGTGGGTACTTGTGCTATGTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTG 87883
| || || | | ||| |||| ||||| | ||||| | | |||| || || ||||
Sbjct 3151 GTGTCGGGAGTAATGCGTTGTACCGTCGGGCTGCCCTTGAGGAGGTTGGTGGTACGGCTG 3092
Query 87884 AAATCGGTTTCAGCGAGGATGTCCACACCGG 87914
| || || ||| |||||||| ||||| ||
Sbjct 3091 AGATTGGGTTCTCTGAGGATGTGCACACGGG 3061
>seq88
Length=140259
Score = 114 bits (126), Expect = 3e-20
Identities = 246/364 (68%), Gaps = 4/364 (1%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||
Sbjct 56920 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTA 56979
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | |||||| || || | || ||||| ||||| ||||| |
Sbjct 56980 GACTTGTAGACCTTCTCGTTGCCAAGGGCGACAAGGAGACGGTCGGCCACGAACTCGATG 57039
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | | ||||||||| | || || || |||| ||||| | |
Sbjct 57040 TACTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACTGCAGGGAAGAGCCTCGGTCAAG 57099
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802
|| ||||| || || | || || || | || || || | ||| |
Sbjct 57100 AACTCCTTCTCAATGACGACGGCATCAGTGATGATCTTCTCGACACGCGCCTTGCTGGGG 57159
Query 251803 TTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGTCGC 251860
|||| ||| | ||| |||| | || || || | || ||||||||||||||| |
Sbjct 57160 CGGTTCCTCAGGTGAGAGAACAGCAGGCAAGCGAAGTCAGT--GTGCAGACCCTCGTCAC 57217
Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920
|| ||| | ||||||||| | ||| |||||||||| || || ||| | |||||||
Sbjct 57218 GAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAAACCGCGCTTCTTCAGCCAGA 57277
Query 251921 AGAT 251924
||||
Sbjct 57278 AGAT 57281
>seq35
Length=278380
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211
||| || ||| || |||| |||||||| ||||| ||||| || ||||| ||| | |||
Sbjct 92995 TCTCTGGGCTCTCGTATTGCCGTCATTGGCCCCAACGGTGCTGGAAAGTCCACCTTGATC 93054
Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271
|| ||| |||| || ||| | |||| ||||| ||||| || |||||
Sbjct 93055 AACGTCTTGACCGGTGAGCTCATCCCCACCGAGGGTGAGATTTGGTCCCACGAGAACATC 93114
Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331
|| || || ||| || |||||||||||| ||||||||| ||||||||||||| |||
Sbjct 93115 CGTATCGCCTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACC 93174
Query 280332 CCTAACCAATACATTCAGTGGCG 280354
|| | | ||||| ||||||||
Sbjct 93175 CCATCCGAGTACATCCAGTGGCG 93197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027830544649475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |