Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq80 187 5e-42 seq4 163 5e-35 seq36 134 3e-26 seq5 134 3e-26 seq35 96.9 6e-15 >seq80 Length=149332 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || |||||||| || | ||| || ||| ||| || |||||||| || |||||| Sbjct 52911 CCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 52852 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 52851 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 52792 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 52791 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 52732 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || |||||||||||||||||||| |||||||| ||| Sbjct 52731 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 52681 >seq4 Length=784365 Score = 163 bits (180), Expect = 5e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||| || || || || | |||||||| || || ||||| || ||||| || | Sbjct 46702 TTTACTGTCCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATATTGT 46761 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || |||| |||||||| |||||||| || ||||| ||||| | || |||| Sbjct 46762 AGTCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGT 46821 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | ||||| || || |||||||| || ||||| ||| ||| || |||||||||| | Sbjct 46822 CTGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTGTCTGAGG 46881 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | || || ||||||||||| | ||||||||||| |||||||| Sbjct 46882 ACTCCACCTCTAGTGTTATCGTTTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 46936 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||||| || |||||| Sbjct 47166 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 47225 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || || Sbjct 47226 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 47285 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| ||||| ||||| | || || || Sbjct 47286 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 47345 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 47346 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 47392 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || || ||||| || || ||||| || ||||| Sbjct 46938 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 46997 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || |||||||| || Sbjct 46998 AGAGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 47057 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||| ||||| | || || || Sbjct 47058 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACC 47117 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || |||||||||||||| || || ||||| Sbjct 47118 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 47164 >seq36 Length=274094 Score = 134 bits (148), Expect = 3e-26 Identities = 374/563 (66%), Gaps = 27/563 (5%) Strand=Plus/Plus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 |||||||| || ||||| ||| ||||||||||| || || || | |||| || Sbjct 3061 CCCGTGTGCACATCCTCAGAGAACCCAATCTCAGCCGTACCACCAACCTCCTCAAGGGCA 3120 Query 59357 TCTCGGCGGTAGACTGCGCATG--TCCCGACGCACACG---GCGCCGCCAAAGGTGTCGC 59411 | || ||||| | ||||| ||||||| || | | ||||| ||| ||| | | Sbjct 3121 GCCCGACGGTACAA--CGCATTACTCCCGACACAGATGCTAGCGCC-CCACCGGT--CCC 3175 Query 59412 GAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCC 59471 || ||||| | || ||||||||||| ||||| || || || | |||| |||| Sbjct 3176 GATTGACCTGCACGACGCGGTAGAACAGCTCCTGCGTGGCGCCGGCGCCCTGCTCGACCC 3235 Query 59472 AAGTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGT 59531 | ||||| || | || ||||||||||||| ||||||| || ||||||||| ||| Sbjct 3236 AGGTCTGCTCATCGGTGACGCGGAAGAACTGGGGGCTCTGCACGATGGCGATCTTGTCGT 3295 Query 59532 CATGGGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591 | | | | | ||| | || |||| |||| ||||| || |||||||| || | Sbjct 3296 CGTCGAGCTGCTCGACCATCAGCTCGCGGAGGAAGTCCGGGCGGGGGCAGAAGTCGGCGT 3355 Query 59592 CGAAGATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCT 59651 |||||||||| |||||| | | || || || ||| || || |||||||| |||| Sbjct 3356 CGAAGATGGCGAAGAAGTCGCCCGTCGTGCGGGCGAAGGCCCACCGCAGGTTGCCCGCCT 3415 Query 59652 TTTTCA--TGTGGTTGTTTTCACGGGTA--ATGTAATTGAAGCCAAACCGCTGGGCGAGA 59707 | || | | || | | | || | | ||||| |||||||| |||||| || || Sbjct 3416 TCTTGAGCCGCGGCCG-GTCCCCGCGCACGATGTAGTTGAAGCCGTACCGCTCCGCCAGC 3474 Query 59708 TCCCGGATCTTGGGGTCTTT---CTTGTCATCGAGGACATAGAC---AGTCTTG---GTG 59758 ||| | | ||| || | ||| ||||| || | || ||||| | Sbjct 3475 CGCCGCACC---ACGTCCTTGGCCCCGTCGTCGAGCACGTGCACCTGGATCTTGTCCGCC 3531 Query 59759 GGCCAGTCTAGAGCAGTGACGTAGGTCCAGGTGTTGTGAATAACCTCGAGGTCTTCGCCG 59818 |||||||| || || || |||| |||| ||||||| | | |||||| || ||| || Sbjct 3532 GGCCAGTCCAGCGCCGTCACGTGCTTCCACGTGTTGTCCAGGATCTCGAGCTCCTCGGCG 3591 Query 59819 CACACGGGAAGAAGGATGTCTAC 59841 ||||| || || |||||| || Sbjct 3592 CACACCGGCAGGTAGATGTCCAC 3614 Score = 134 bits (148), Expect = 3e-26 Identities = 203/277 (73%), Gaps = 15/277 (5%) Strand=Plus/Minus Query 275303 GGTTTCAA-TATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCGG 275361 || ||||| || ||||||||| ||||||||| | |||||||| |||||||| ||| Sbjct 3458 GGCTTCAACTACATCGTGCGCGGGGACCGGCCGCGGCTCAAGAAGGCGGGCAACCTGCGG 3399 Query 275362 TCCGCCTTTACCAAGACAGACGG-CGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCC 275420 | ||||| || || ||||| ||| ||||| | |||||| ||||||||||||||||| Sbjct 3398 TGGGCCTTCGCCCGCAC-GACGGGCGACTTCTTCGCCATCTTCGACGCCGACTTCTGCCC 3340 Query 275421 AAGGCCCGACTTCCTC---GAGGAGACACTTG-GCAGGATGAAGGCAGATCCCACGATTG 275476 | || ||||||||| ||| || | | |||| || | | || || ||| | Sbjct 3339 CCGCCCGGACTTCCTCCGCGAGCTGATGGTCGAGCAGCTCGACGAC-GA---CAAGATCG 3284 Query 275477 CCATCTTCCAAACTCCCCAGTTCTT-CGAG-CAGCGCAATGAGCAGAACTACGTGGAGAA 275534 ||||| | || | ||||||||||| || | || || ||||||||| || || ||| | Sbjct 3283 CCATCGTGCAGAGCCCCCAGTTCTTCCGCGTCACCG--ATGAGCAGACCTGGGTCGAGCA 3226 Query 275535 GGGAGCCGGCGCCGTCCAGGAGCTCTTCTATCGCCTC 275571 ||| ||||||||| |||||||| ||||| ||| || Sbjct 3225 GGGCGCCGGCGCCACGCAGGAGCTGTTCTACCGCGTC 3189 >seq5 Length=773751 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || | |||||| |||||||| || Sbjct 717619 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 717560 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 717559 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 717500 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 717499 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 717441 >seq35 Length=278380 Score = 96.9 bits (106), Expect = 6e-15 Identities = 434/676 (64%), Gaps = 44/676 (7%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | |||||| ||||||||||||| || || ||| |||||| Sbjct 93197 CGCCACTGGATGTACTCGGATGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 93138 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| || ||| | | | || || || Sbjct 93137 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGGGACCAAATCTCACCCTCGGTGGGG 93078 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||| | ||| ||||| | || | ||| || ||||| ||||||||||| Sbjct 93077 ATGAG-CTCACCGGTCAAGACGTTGATCAAGGTGGACTTTCCAGCACCGTTGGGGCCAAT 93019 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG--- 225216 ||| |||| || || || | ||| || | | || | |||||| ||| Sbjct 93018 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGGT---GATGTCGGAGATCTGAGGCTT 92962 Query 225217 ------GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACG 225264 |||| |||| |||| || | ||||||| |||||| Sbjct 92961 GGTGGTACCAG---GGTACTGGAAGGTCATCCTGTTGGCACGCAG------GATGGCCTT 92911 Query 225265 GTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGC 225324 | |||||| ||| |||||| ||||| || ||||| ||||| ||| | | | | Sbjct 92910 GGCCTTGGTCTTAACACCCTCAAGGAAACCAGGCTCAGGGAAGGAGAACTCGACCTCGGA 92851 Query 225325 GTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGC--CACGAAAGCAGACAGG 225382 | || ||| |||||| |||| ||| | ||| | ||||| | | |||| Sbjct 92850 AGCACCAAGCTCGAAGTAAGCCTTGGCCTTGGG--GTTTTTCTTGACGAACTCGGTCAGG 92793 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || || || ||||||||| ||| |||||| | | | | ||| | | Sbjct 92792 TTACCCTTGTAGGTCTTGAGCTTGAAGTTACCCTCGTAGTTGATGACGTACTCGCA-AAT 92734 Query 225443 GC-GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAG-GCCC 225499 || ||| ||||| ||||||||||| ||||| ||||| || | || || || | | Sbjct 92733 GCGGTCGAGGAAACCAGAGTCGTGAGACACGATGATCGAGGTGCA-----GTGAGAGTTC 92679 Query 225500 TTGAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558 | |||| || | |||||| ||||| | ||||||| |||||| || || ||||| Sbjct 92678 TCAAGGT-AGTCCTCGAGCCACTTAACGTTCTTCACGTCCAAGTGGTTCGTGGGCTCGTC 92620 Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618 || |||||||| || | | || || ||| || || | |||||||| ||||| Sbjct 92619 AAGCAGCAGGATATCGGGGTTCTCGAAGACGGCACGGCACAGGGCAAGCTTCATCTTCCA 92560 Query 225619 GCCCCCGGACAGGGAG 225634 || ||||| || ||| Sbjct 92559 ACCACCGGAGAGCGAG 92544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616927867000