Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14 383 3e-101 seq88 269 5e-67 >seq14 Length=442650 Score = 383 bits (424), Expect = 3e-101 Identities = 908/1356 (67%), Gaps = 37/1356 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | ||||| || |||||||||| ||| | || || Sbjct 87487 GTTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGG 87546 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||||| ||| || || |||||||||| || Sbjct 87547 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGCGCCAT 87606 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTG-AGCTCGTTCCAGTCCC 244268 || || ||||| | | |||||| || ||| | | || | | | |||||||| Sbjct 87607 CAACAAGCTGTTTCGGATACCGTGCTCCTTGAT-CTTTGCCTTCAAAGCATCCCAGTCCC 87665 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 | | | || ||| | || ||||||||||||| | || ||| | |||| Sbjct 87666 AAAGATCAGA-AGGC--------TGGACGCCCCACATGTCATATTGAAGCTGTCCCTGCG 87716 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT 244388 ||||||| |||||||| ||| |||| || ||||| || ||| | | || | Sbjct 87717 AGACGGGGGATCCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACG 87776 Query 244389 C-GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 | ||| | | | |||| ||||||||||||||||||| ||||||| | ||| |||| Sbjct 87777 CAGTCAAAG-CAGCGTGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCA 87835 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | | || || |||| | || |||| | ||||| || ||||| || || | Sbjct 87836 GGGGACTCAAATGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGGACACCAACA 87895 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||| ||||||||| ||||| | | ||| || | ||||||||| |||| | Sbjct 87896 CCAATGGGCCTGTGTCGCATGTTGCTGTTGTATGCCTCCTT-CACGGGGTAGTGGTTGAC 87954 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 || || | |||||| |||||||| | | || ||| ||| || |||| || Sbjct 87955 ATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGGTGCTGGAA 88014 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 || ||| || | || | | | | || | || | ||| | | | Sbjct 88015 GTTGTAGCAGTTGTTTTCGTAGTCAA----------CATATGCTGGCAGAG--CAATGGA 88062 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||||||||||||| |||||||| || | ||||| || ||||||||||| || Sbjct 88063 GGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAG 88122 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || |||||| ||||||| || || ||| |||| ||||||||| ||||| Sbjct 88123 GTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTT 88182 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 |||||||||||| || ||||||||| |||||| |||||| | || ||| || | Sbjct 88183 GTAGAGCATGAAAGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTT 88242 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | |||||| | ||| |||| | ||| ||| |||||| |||||| ||||| Sbjct 88243 CTGAGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTC 88302 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 ||||||| || || || | ||||| |||||| ||||||||||| |||| Sbjct 88303 GAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCA 88362 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 |||||| | || |||| || |||||||||||| || |||||||| || ||||||| Sbjct 88363 GTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGAGCAAGGAAGAG 88422 Query 245047 GTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 ||| | || ||| | ||| ||| || |||||| | || || | || || ||| Sbjct 88423 GTCGCGGG--CTCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAGTCGAGGAACTCGAAG 88480 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || || ||||||| ||||||| ||||| ||||| || || || ||||| || || ||| Sbjct 88481 ACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTATTACCACCC 88540 Query 245165 TGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 ||||| || | | || | |||||||| || || | || | || ||||| || Sbjct 88541 TGGTCAACGTAACGGGC-AGTGTTGTTGAAGACACGAAGCATGGGAATGATACCGTTTGA 88599 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCC 245283 ||||||||| || |||||| | ||| || | | || | || | || || Sbjct 88600 CGTGCCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATACGGTGGACGTTCAGACC 88659 Query 245284 TAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTC 245343 | || ||||| ||||||||| | |||||| |||||| || || || || || Sbjct 88660 AATACCTCCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGAGTATCGTAGATACCTTC 88719 Query 245344 CATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCA 245403 || ||||| |||||||| || || ||||| || |||| ||| ||| |||||| | | Sbjct 88720 AATACTGTCATCCTTCATGTCGACGAGGAAGCACGACGACAACTGAGGC-TGGGGC-GTA 88777 Query 245404 CGAG--TTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | || |||||||| || || ||||| || ||| Sbjct 88778 CCAGCATTGAACAGTGTAGGCGATGCGTGCGTGAAG 88813 >seq88 Length=140259 Score = 269 bits (298), Expect = 5e-67 Identities = 370/514 (72%), Gaps = 5/514 (1%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| |||||||| || || |||||| | | ||| | || Sbjct 57407 CCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCTACC 57348 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 | || || | ||||| ||||| | || || ||||| ||||||||| || || ||| Sbjct 57347 TACGCTCAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTC 57288 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 ||||||||||||||||| ||| || | | |||||| || || |||||||| ||||| Sbjct 57287 GCCTCCATCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGAG 57228 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || ||| | |||||||| ||||| | ||||| || ||||| |||||||| ||| Sbjct 57227 CTGATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTC---TCAC 57171 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || ||| || ||| |||| ||| ||| | |||||||| || ||||| | || Sbjct 57170 CTGAGGAACCGCCCCAGCAAGGCGCGTGTCGAGAAGATCATCACTGATGCCGTCGTCATT 57111 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 |||||||||||| | || || | || ||| ||| ||||||||||| | |||| Sbjct 57110 GAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACCTG 57051 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCG 43051 ||| |||||||| ||| ||| ||||||| ||||| ||| | ||| || | Sbjct 57050 ATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCGCCCTTGGCAACGAGAAG 56991 Query 43052 CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 ||||||| | | |||||||||||| |||||||||||||| | | |||||||| Sbjct 56990 -GTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGAC 56932 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||| ||||||||||| |||| ||||||||| Sbjct 56931 CAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 56898 Score = 156 bits (172), Expect = 8e-33 Identities = 239/336 (71%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||| || ||| |||||||||||||||||| ||||| Sbjct 57806 ATCTGGCAGATGTACAAGAAGCATGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTT 57747 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 |||||||| | || |||| || || | |||| || ||||||||| ||| || Sbjct 57746 TCCAAGGACCTGCACGACTGG-AGCAACCGCCTGAACGATGACGAAAAGTACTTCATCTC 57688 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | ||| || ||||||||||| || || || || || ||||| |||||||||| | | Sbjct 57687 TACCATCCTTGCCTTCTTCGCTGCTTCCGATGGTATTGTCAACGAGAACCTGGTCGAGCG 57628 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | |||||| || |||||||||||||||||||| || Sbjct 57627 TTTCAGCGCCGAGGTCCAGATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGAT 57568 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| || Sbjct 57567 GGAGAACATTCACTCCGAGACATACTCC---CTGCTCATCGACACATACATCAAGGAGCC 57511 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | |||| | | || ||||| ||||| || || Sbjct 57510 TGCCCAGCGCACCTACCTTTTCAATGCCATTGACAC 57475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333592986000