Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq88 143 6e-29 >seq88 Length=140259 Score = 143 bits (158), Expect = 6e-29 Identities = 317/467 (68%), Gaps = 10/467 (2%) Strand=Plus/Minus Query 243292 GCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTG 243350 ||| ||||||| || |||| | ||| ||||| ||||| | || ||| |||| Sbjct 57344 GCTCAGCGTCTGGTTGCCTTCGC-TGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTCGC 57286 Query 243351 CGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTT 243410 | ||||||| |||||| ||| ||| |||||||||| || | || |||||| | Sbjct 57285 CTCCATCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGAGCT 57226 Query 243411 CATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCA 243470 ||| ||| |||||||| || ||| | |||| | || ||| || | || Sbjct 57225 GATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTGAG 57166 Query 243471 GAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 |||| | ||| | | || ||| | | |||||||| || || || | | || Sbjct 57165 GAACCGCC--CCAG-CAAGGCGCGTGTCGAGAAGATCATCACTGATGCCGTCGTCATTGA 57109 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 ||||| ||| | ||| ||| |||| ||| | || | ||||||||| | | || || Sbjct 57108 GAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACCTGAT 57049 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | ||||||||||| ||||| |||||||| | | |||| ||||| | ||||| || Sbjct 57048 GAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCGCCCTTGGCAACGAGAAGGT 56989 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||| || | |||||||| | ||| |||||| ||| || ||| || || || || Sbjct 56988 CTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAA 56929 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 ||||||||| ||||||||| |||| || || | | || ||||| ||| Sbjct 56928 CTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCC-GGTGTCATG 56883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873287941250