Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4 111 2e-19
seq88 107 2e-18
seq80 89.7 5e-13
>seq4
Length=784365
Score = 111 bits (122), Expect = 2e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || |||||| ||||||||| || || |||| |
Sbjct 46971 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCA 47030
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 47031 AAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 47090
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||||| ||||| ||||| | || | || || ||||| || || ||
Sbjct 47091 TTG-TCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTT 47149
Query 138600 TACAAAAATCTGCAT 138614
||||| || |||||
Sbjct 47150 GACAAAGATTTGCAT 47164
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | || | | | |||||||| || ||||||||||||
Sbjct 47166 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 47225
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || |||| | |||| || ||||| ||||| |||||
Sbjct 47226 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 47285
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | ||||||| |||||||
Sbjct 47286 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATAGTGTCGGAAGACTCCA 47343
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616
|||||| || | || || || || || || || || || ||||||||||
Sbjct 47344 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 47394
>seq88
Length=140259
Score = 107 bits (118), Expect = 2e-18
Identities = 343/520 (66%), Gaps = 19/520 (4%)
Strand=Plus/Minus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC---GAGAGCGACACC 52382
|| || ||| | || || ||||| | ||||| ||||||||||| || ||| |
Sbjct 57410 GTTCCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCT 57351
Query 52383 GCC-ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441
|| ||||| |||| |||| |||||||| || ||||| | || || |||
Sbjct 57350 ACCTACGCTC----AGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGG 57295
Query 52442 CAGCTTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500
||||| ||| ||||||| | | || | | || | ||||| || ||||| |||
Sbjct 57294 T-GCTTTCGCCTCCATCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCT 57236
Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTAC 52559
||||||| |||| || || ||||| || |||||||| ||||| || ||||| || |
Sbjct 57235 CCAACGAGCTGATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCT 57176
Query 52560 AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGA-TCCTGAGCATGTTCAAGGAGGC 52618
|| | | |||| | | | | | || || || || ||| || ||
Sbjct 57175 CTCACCTGAGGAACCGCCCCA--GCAA---GGCGCGTGTCGAGAAGATCATCACTGATGC 57121
Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678
|| | || || |||||||| || || | || || || | ||||| ||||||||
Sbjct 57120 CGTCGTCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAA 57061
Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738
||| | ||| ||||||||||||| ||||| || ||||| | || || ||
Sbjct 57060 CGCCAACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCGCCCTTGG 57001
Query 52739 GCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797
|| | | ||| || ||| || ||| || || || || ||| | ||||| || ||||
Sbjct 57000 -CAACGAGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTG 56942
Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||| ||||||||||| ||||| || ||
Sbjct 56941 GCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 56902
>seq80
Length=149332
Score = 89.7 bits (98), Expect = 5e-13
Identities = 139/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| | ||||| ||||||||| || || |||| |
Sbjct 52876 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 52817
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540
||| || ||||| ||||| || || || || || ||||| ||| | || | || ||
Sbjct 52816 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGACAT 52758
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | |||||| | ||||||||||| | || | || || || || || || ||
Sbjct 52757 TG-TCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTG 52699
Query 138601 ACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 52698 ACGAAGATCTGCATG 52684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259453442000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |