Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 seq88 107 2e-18 seq80 89.7 5e-13 >seq4 Length=784365 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || |||||| ||||||||| || || |||| | Sbjct 46971 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCA 47030 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 47031 AAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 47090 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||| ||||| | || | || || ||||| || || || Sbjct 47091 TTG-TCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTT 47149 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 47150 GACAAAGATTTGCAT 47164 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| || |||||||||||| Sbjct 47166 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 47225 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | |||| || ||||| ||||| ||||| Sbjct 47226 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 47285 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||||||| ||||||| Sbjct 47286 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATAGTGTCGGAAGACTCCA 47343 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || || || || || || || |||||||||| Sbjct 47344 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 47394 >seq88 Length=140259 Score = 107 bits (118), Expect = 2e-18 Identities = 343/520 (66%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC---GAGAGCGACACC 52382 || || ||| | || || ||||| | ||||| ||||||||||| || ||| | Sbjct 57410 GTTCCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCT 57351 Query 52383 GCC-ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 || ||||| |||| |||| |||||||| || ||||| | || || ||| Sbjct 57350 ACCTACGCTC----AGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGG 57295 Query 52442 CAGCTTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500 ||||| ||| ||||||| | | || | | || | ||||| || ||||| ||| Sbjct 57294 T-GCTTTCGCCTCCATCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCT 57236 Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTAC 52559 ||||||| |||| || || ||||| || |||||||| ||||| || ||||| || | Sbjct 57235 CCAACGAGCTGATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCT 57176 Query 52560 AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGA-TCCTGAGCATGTTCAAGGAGGC 52618 || | | |||| | | | | | || || || || ||| || || Sbjct 57175 CTCACCTGAGGAACCGCCCCA--GCAA---GGCGCGTGTCGAGAAGATCATCACTGATGC 57121 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || | || || |||||||| || || | || || || | ||||| |||||||| Sbjct 57120 CGTCGTCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAA 57061 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 ||| | ||| ||||||||||||| ||||| || ||||| | || || || Sbjct 57060 CGCCAACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCGCCCTTGG 57001 Query 52739 GCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 || | | ||| || ||| || ||| || || || || ||| | ||||| || |||| Sbjct 57000 -CAACGAGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTG 56942 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| ||||| || || Sbjct 56941 GCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 56902 >seq80 Length=149332 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | ||||| ||||||||| || || |||| | Sbjct 52876 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 52817 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| || ||||| ||||| || || || || || ||||| ||| | || | || || Sbjct 52816 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGACAT 52758 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||||||||| | || | || || || || || || || Sbjct 52757 TG-TCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTG 52699 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 52698 ACGAAGATCTGCATG 52684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259453442000