Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq88 143 4e-29 seq14 105 1e-17 >seq88 Length=140259 Score = 143 bits (158), Expect = 4e-29 Identities = 335/500 (67%), Gaps = 13/500 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | ||| || |||||||| |||| ||||| Sbjct 56916 CTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTT 56975 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | || || ||| |||| || || || | || | | ||| ||||| || | Sbjct 56976 GGTAGACTTG-TAGACCTTCTCGTTGCCAAGGGCGACAAGGAGACGGTCGGCCACGAACT 57034 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 ||||||| || | |||| | | ||| || || ||||| || ||| || || || Sbjct 57035 CGATGTA-CTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGACTGCAGGGAAGAGCCTCG 57093 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 | || |||||||||||||| |||| || || || | |||| | |||||| | | Sbjct 57094 GTCAAGAACTCCTTCTCAATGACGACGGCATCAGTGATGATCTTCTCGACACGCGCCTTG 57153 Query 159887 CCCGGC---TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | || || | || ||| ||||| ||||| || ||||| |||||| Sbjct 57154 CTGGGGCGGTTCCTCA------GGTGAGAGAACAGCAGGCAAGCGAAGTCAGTGTGCAGA 57207 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| |||||||| | ||||||||| | | | || || ||||| | || ||| Sbjct 57208 CCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAAACCGCGCTTC 57267 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 || ||||| || |||| || ||||||||||| || ||||| ||||| || || || || Sbjct 57268 TTCAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAG 57327 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || || || | || | | | | | | | ||| | ||||| | |||||| || Sbjct 57328 GCAACCAGACGCTGAGCGTAGGTAGACTCGTGGTCCGTGATCCACTTCAGGGCCCAGTCG 57387 Query 160124 GCCTTCTTTGCGATGCACGG 160143 |||||||| |||||| || Sbjct 57388 GCCTTCTTACGGATGCAGGG 57407 >seq14 Length=442650 Score = 105 bits (116), Expect = 1e-17 Identities = 328/496 (66%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGC-GTTCACGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||||||||||| | | || | ||||| | | || ||||||||| Sbjct 87139 CTGGTCGACGGTGAACTGAATGGGTGCTGCCGCC--GCCTGAGTGCGGAGGTAGTACATG 87196 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || ||| || ||| ||| | ||||||| || | |||| || || Sbjct 87197 CCAGTCTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATCGTG 87256 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || |||||| ||||| |||||||| ||||||||| ||||| || || || || Sbjct 87257 GGCTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATG-AAGGCACCGCGGTCAGC 87315 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 | ||| | | ||| ||| |||| || | ||||| || |||||| ||| | || | Sbjct 87316 AGACATCTGCACAATCGTCCTCTGAGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGAT 87375 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | || | || | || || ||| || || | ||||| || | | || Sbjct 87376 ATCGGCCGGGA-TGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATGATACGGTTCT 87434 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | |||| ||||| | |||| || |||| |||| | || |||||||| | Sbjct 87435 TCATAGCCTCAGACCACA-GACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACG 87493 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | ||||| | ||| | | | ||| |||| |||| ||||| Sbjct 87494 ACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAG 87553 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | |||||| | ||| || || |||||||| |||| | || | Sbjct 87554 CACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGCGCCATCAACAAG 87613 Query 204314 GAGTTGCGCACACCGT 204329 ||| || | ||||| Sbjct 87614 CTGTTTCGGATACCGT 87629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150478766000