Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq88 163 3e-35 seq80 122 9e-23 seq4 116 4e-21 seq5 111 2e-19 >seq88 Length=140259 Score = 163 bits (180), Expect = 3e-35 Identities = 331/482 (69%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 56917 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 56976 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||| | || |||| || || | ||||||||||||| Sbjct 56977 GTAGACTTGTAGACCTTCTCGTTGCCAA---GGGCGACAAGGAGACGGTCGGCCACGAAC 57033 Query 132742 TCGATGTATTGCGACAT-GGTTTCGCAATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTT 132799 |||||||| ||| ||| | || || || | || ||||||| ||| || || || | Sbjct 57034 TCGATGTACTGCTTCATCAGGTTGGC-GTTCATGCCGAGCAGACTGCA-GGGAAGAGCCT 57091 Query 132800 CGGT-GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 |||| |||| | || ||| ||| |||| || || |||| ||| | | || |||||| Sbjct 57092 CGGTCAAGAACTCCTT-CTCAATGACGACGGCATCAGTGATGATCTTCTCGACACGCGCC 57150 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| || || | | || || ||||| || |||||| ||||| |||| ||| Sbjct 57151 TTGCTGGGGCGGTTCCTCAGGTGAGAGAACAGCAGGCAAGCGAAGTCAGTGTGCAGACCC 57210 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || || || |||||| ||| |||| || ||||| | ||||| || || Sbjct 57211 TCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAAACCGCGCTTCTTC 57270 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| ||||||| || ||||||| ||||| || || ||||| || Sbjct 57271 AGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCA 57330 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 ||||| |||| || | || | || | | | |||||| ||| ||||| |||||| Sbjct 57331 ACCAGACGCTGAGCGTAGGTAGACTCGTGGTCCGTGATCCACTTCAGGGCCCAGTCGGCC 57390 Query 133099 TT 133100 || Sbjct 57391 TT 57392 Score = 140 bits (154), Expect = 3e-28 Identities = 199/277 (72%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 57522 GTATGTGTCGATGAGCAGGGAGTATGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 57581 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 |||||| ||||| || ||||| | ||| || || | || ||||||||||||||| | Sbjct 57582 GCCGTAGAAGCAACGGGCCTCAGGGATCTGGACCTC-GGCGCTGAAACGCTCGACCAGGT 57640 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | |||||||| || || ||| || ||||| ||||| || | | |||||| | Sbjct 57641 TCTCGTTGACAATACCATCGGAAGCAGCGAAGAAGGCAAGGATGGTAGAGATGAAGTACT 57700 Query 133346 GCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||| ||||||| ||| | ||||||| || ||||||||| ||||| | ||||| Sbjct 57701 TTTCGTCATCGTTCAGGCGGTTGCTCCAGTCGTGCAGGTCCTTGGAAAGGTCGATCTCCT 57760 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || ||||||| || || ||||| || |||||||| Sbjct 57761 CGGCGGTCCAGAAGGAAGCCTCATGCTTCTTGTACAT 57797 >seq80 Length=149332 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||||||| | || || ||| || | Sbjct 52685 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTCG 52744 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || ||| ||||||| Sbjct 52745 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 52804 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 52805 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 52864 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || || || | ||| |||| Sbjct 52865 ATCCAGAAGGAGAGC-ACCCTTCACCTCGTGTTGCG 52899 >seq4 Length=784365 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | || Sbjct 47392 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 47333 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| |||||||| || | ||||| Sbjct 47332 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCA 47274 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || |||| ||||||||| ||||||||| Sbjct 47273 GCAGCGCCTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 47214 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || | || || ||| | | ||||| Sbjct 47213 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTCCGTGGCGG 47166 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| |||||||| | || |||||| || || Sbjct 47164 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 47105 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 47104 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 47045 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || |||| || || || |||||||||| Sbjct 47044 CAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTGTCCGACTACAAC 46985 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || || ||||| || || Sbjct 46984 ATTCAGAAGGAGTCTACTCTCCACTTGGTTCTCCG 46950 >seq5 Length=773751 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | | Sbjct 717441 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 717500 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 717501 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 717560 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 717561 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 717620 Query 38433 G 38433 | Sbjct 717621 G 717621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169830224000