Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq88 163 3e-35
seq80 122 9e-23
seq4 116 4e-21
seq5 111 2e-19
>seq88
Length=140259
Score = 163 bits (180), Expect = 3e-35
Identities = 331/482 (69%), Gaps = 12/482 (2%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 56917 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 56976
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | |||||| ||| | |||| | || |||| || || | |||||||||||||
Sbjct 56977 GTAGACTTGTAGACCTTCTCGTTGCCAA---GGGCGACAAGGAGACGGTCGGCCACGAAC 57033
Query 132742 TCGATGTATTGCGACAT-GGTTTCGCAATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTT 132799
|||||||| ||| ||| | || || || | || ||||||| ||| || || || |
Sbjct 57034 TCGATGTACTGCTTCATCAGGTTGGC-GTTCATGCCGAGCAGACTGCA-GGGAAGAGCCT 57091
Query 132800 CGGT-GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858
|||| |||| | || ||| ||| |||| || || |||| ||| | | || ||||||
Sbjct 57092 CGGTCAAGAACTCCTT-CTCAATGACGACGGCATCAGTGATGATCTTCTCGACACGCGCC 57150
Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918
||| || || | | || || ||||| || |||||| ||||| |||| |||
Sbjct 57151 TTGCTGGGGCGGTTCCTCAGGTGAGAGAACAGCAGGCAAGCGAAGTCAGTGTGCAGACCC 57210
Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
||||| | || || || |||||| ||| |||| || ||||| | ||||| || ||
Sbjct 57211 TCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAAACCGCGCTTCTTC 57270
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038
||||| || |||| ||||||| || ||||||| ||||| || || ||||| ||
Sbjct 57271 AGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCA 57330
Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098
||||| |||| || | || | || | | | |||||| ||| ||||| ||||||
Sbjct 57331 ACCAGACGCTGAGCGTAGGTAGACTCGTGGTCCGTGATCCACTTCAGGGCCCAGTCGGCC 57390
Query 133099 TT 133100
||
Sbjct 57391 TT 57392
Score = 140 bits (154), Expect = 3e-28
Identities = 199/277 (72%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 57522 GTATGTGTCGATGAGCAGGGAGTATGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 57581
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285
|||||| ||||| || ||||| | ||| || || | || ||||||||||||||| |
Sbjct 57582 GCCGTAGAAGCAACGGGCCTCAGGGATCTGGACCTC-GGCGCTGAAACGCTCGACCAGGT 57640
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| |||||||| || || ||| || ||||| ||||| || | | |||||| |
Sbjct 57641 TCTCGTTGACAATACCATCGGAAGCAGCGAAGAAGGCAAGGATGGTAGAGATGAAGTACT 57700
Query 133346 GCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||| ||||||| ||| | ||||||| || ||||||||| ||||| | |||||
Sbjct 57701 TTTCGTCATCGTTCAGGCGGTTGCTCCAGTCGTGCAGGTCCTTGGAAAGGTCGATCTCCT 57760
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| ||||||| || || ||||| || ||||||||
Sbjct 57761 CGGCGGTCCAGAAGGAAGCCTCATGCTTCTTGTACAT 57797
>seq80
Length=149332
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| || ||||||||| | || || ||| || |
Sbjct 52685 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTCG 52744
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| ||||| || ||| |||||||
Sbjct 52745 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 52804
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||||| || |||| || |||||| ||||||||||
Sbjct 52805 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 52864
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| ||| || || || | ||| ||||
Sbjct 52865 ATCCAGAAGGAGAGC-ACCCTTCACCTCGTGTTGCG 52899
>seq4
Length=784365
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | ||
Sbjct 47392 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 47333
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || || | ||||| |||||||| || | |||||
Sbjct 47332 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCA 47274
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||||| || |||| ||||||||| |||||||||
Sbjct 47273 GCAGCGCCTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 47214
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || | || || ||| | | |||||
Sbjct 47213 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTCCGTGGCGG 47166
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| ||||| |||||||| | || |||||| || ||
Sbjct 47164 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 47105
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || |||| ||||| ||||| || ||| |||||||
Sbjct 47104 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 47045
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || |||| || || || ||||||||||
Sbjct 47044 CAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTGTCCGACTACAAC 46985
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| || ||||| | || || || ||||| || ||
Sbjct 46984 ATTCAGAAGGAGTCTACTCTCCACTTGGTTCTCCG 46950
>seq5
Length=773751
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || |||||| || |||||| | |
Sbjct 717441 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 717500
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| |
Sbjct 717501 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 717560
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | |||||||| ||||||||||||||| |||
Sbjct 717561 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 717620
Query 38433 G 38433
|
Sbjct 717621 G 717621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169830224000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |