Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq80 138 3e-27 seq4 129 1e-24 seq5 111 3e-19 seq14 98.7 2e-15 >seq80 Length=149332 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || |||||||| ||| ||| || || || ||||| |||| || || | Sbjct 52903 GAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 52844 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| || |||||||| || || || ||||| || || ||||| || Sbjct 52843 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTC 52784 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| ||||| || |||||| || || ||||||||||| ||||| |||||||| Sbjct 52783 CTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGT 52724 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || ||||| | ||||| Sbjct 52723 GATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 52685 >seq4 Length=784365 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || |||||||| || | || || | |||||||| | ||| Sbjct 46733 GTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTCCGGCCATCTTCCAACTG 46792 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || |||||||| || || || || ||||| || || || Sbjct 46793 CTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT 46852 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||||||||| || ||||| || || || | ||| ||||| || Sbjct 46853 GCTCTTCACGTTGTCAATGGTGTCTGAGGACTCCACCTCTAGTGTTATCGTTTTTCCCGT 46912 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 46913 CAATGTCTTGACGAAGATCTGCAT 46936 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| ||||| || ||||| ||||| |||| ||||| | || || || Sbjct 46955 AACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTC 47014 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 47015 GAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 47074 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| || || || ||||| || || || ||||| || | ||||| Sbjct 47075 GATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTT 47134 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 47135 GCCAGTGAGGGTCTTGACAAAGATTTGCAT 47164 >seq5 Length=773751 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| ||||||||||| || |||||||| Sbjct 717619 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 717560 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || ||||| || || ||||| || ||||| || || || |||||| || || Sbjct 717559 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 717500 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| || || || |||||||| | ||||| || |||| || || ||||| Sbjct 717499 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 717441 >seq14 Length=442650 Score = 98.7 bits (108), Expect = 2e-15 Identities = 237/357 (66%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAAAAGCCCGGAGGTGATGACCTGA 160571 ||||||| ||| |||| || || |||| ||||||| | || | || | || | Sbjct 88494 TGGCACGCTGATGTCTTCGAGTTCCTCGACTTGCGAAAGAACCACG--GTAAGGAGGAGG 88437 Query 160572 TGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGA 160631 | ||||| | || | ||| || |||||| | | || || ||||||||| | || Sbjct 88436 TCCGAGCCCGCGACCTCTTCCTTGCTCTCTGGATTCCTGACCTCTTCATGAAGCGGGTTG 88377 Query 160632 AAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTT 160691 | | || || || |||| ||| | || ||||| || ||||| |||| ||| | Sbjct 88376 AGAAGAACGGCGACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCT 88317 Query 160692 ATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGG 160751 | ||| |||||||||| |||| || || | ||||| | ||| || | | | ||| Sbjct 88316 ACGGTGACGAGTTCGAGGCTCTGTACGAGAAGTACGAGAGAGAAGGCCGCGGCCGCAAGA 88257 Query 160752 TCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGC 160811 | ||||||| || | |||||| | |||||| | ||||| |||| || | | Sbjct 88256 CCATGAAGGCTCAGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACC 88197 Query 160812 CCTTTATCGCATACAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 | || || |||||||||||| | |||||||| |||||||||||| | |||| Sbjct 88196 CTTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 88140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474847764325